Wold Lab|
⇤ ← Revision 1 as of 2012-09-11 18:42:16
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| * [[http://networkx.lanl.gov/ | Network X]] graph library * [[http://networkx.lanl.gov/pygraphviz/ | PyGraphViz]] python bridge to graphviz * [[http://www.graphviz.org/ | GraphViz ]] graph visiualization toolkit |
* [[http://networkx.lanl.gov/ | Network X]], python graph library * [[http://networkx.lanl.gov/pygraphviz/ | PyGraphViz]], python bridge to graphviz * [[http://www.graphviz.org/ | GraphViz ]], graph visiualization toolkit |
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| * [[http://hgdownload.cse.ucsc.edu/admin/jksrc.zip | UCSC Genome Browser]], various utilities and libraries from UCSC |
Installed Software
Information about the extra software packages we have installed.
samtools, SAM/BAM file library and utilites
bowtie, sequence read mapper
cufflinks, RNA-Seq differential expression analysis
tophat, splice junction mapper
bioconductor, meta-package for R bioinformatics
BLAST+, sequence alignment tool. (well actually we have older version)
Network X, python graph library
PyGraphViz, python bridge to graphviz
GraphViz, graph visiualization toolkit
librdf, RDF toolkit
UCSC Genome Browser, various utilities and libraries from UCSC