Installed Software
Information about the extra software packages we have installed.
samtools, SAM/BAM file library and utilites
bowtie, sequence read mapper
cufflinks, RNA-Seq differential expression analysis
tophat, splice junction mapper
bioconductor, meta-package for R bioinformatics
BLAST+, sequence alignment tool. (well actually we have older version)
Network X graph library
PyGraphViz python bridge to graphviz
GraphViz graph visiualization toolkit
librdf, RDF toolkit