Library Name

Library ID: 10155
Name: C57 Brain + Spikes (profile 2)
Affiliations:
  • Brian Williams ( Barbara Wold )

Sample Details

Species: Mus musculus
Experiment Type: RNA-seq
Background or Cell Line: Unknown
Condition: Unknown
Replicate: 1

Library Details

Library Type: None
Multiplex Index:
Creation Date 2008-01-02
Made By: Brian
Gel Cut Size: 225
Protocol Stopping Point Ligation, gel, then 18x PCR

Comments

Georgiin a post 2011-10-10 16:14 PST
ran bowtie for http://jumpgate.caltech.edu/10155 again
Dianein a post 2011-12-13 14:12 PST
Uploaded http://jumpgate.caltech.edu/10155 to UCSC
QC botin a post 2011-12-13 14:12 PST

Failed launch.
Spammerin a post 2011-12-13 14:12 PST

Stare into the kitten.

Raw Result Files

Run Start Date Cycle Flowcell Lane Summary Eland Bed Archived
Jan. 4, 2008 C1-33 2023DAAXXEdit 5 Summary
Jan. 4, 2008 C1-33 2023DAAXXEdit 6 Summary
Jan. 4, 2008 C1-33 2023DAAXXEdit 7 Summary
Jan. 4, 2008 C1-33 2023DAAXXEdit 8 Summary
Dec. 28, 2007 C1-33 2038EAAXXEdit 1 Summary

Lane Summary Statistics

No Match QC Failed Unique Repeat
Cycles Flowcell Lane End Cluster / Tile pM Raw Reads total % total % 0 mismatch 1 mismatch 2 mismatch Total 0 mismatch 1 mismatch 2 mismatch Total
C1-33 2038EAAXX (archived) 1 22,698 7,490,515 3,718,833 49.65 383,060 5.11 1,270,240 894,782 629,683 2,794,705 299,112 176,691 118,114 593,917

Flowcell Notes

Flowcell ID Lane Comment
2038EAAXX (archived) Edit 1 None
2023DAAXX (archived) Edit 5 None
2023DAAXX (archived) Edit 6 None
2023DAAXX (archived) Edit 7 None
2023DAAXX (archived) Edit 8 None

Count of multi-reads

C1-33 2038EAAXX (archived) lane 1

  • chr3.fa: 96,862
  • chr4.fa: 150,865
  • chrY.fa: 107
  • chr4_random.fa: 36
  • chrY_random.fa: 60
  • chr6.fa: 121,047
  • chrX_random.fa: 51
  • chr10.fa: 137,105
  • chr19.fa: 98,118
  • chr12.fa: 89,930
  • chr1.fa: 148,673
  • chr1_random.fa: 382
  • chr8.fa: 142,176
  • unknown: 0
  • chr8_random.fa: 10
  • chrX.fa: 76,478
  • chr17.fa: 120,609
  • chr15.fa: 128,051
  • chr7.fa: 228,193
  • chr18.fa: 77,446
  • chrM.fa: 145,174
  • chrUn_random.fa: 14
  • newcontam_UK.fa: 343
  • chr13.fa: 69,807
  • chr11.fa: 251,138
  • chr16.fa: 75,288
  • chr14.fa: 81,570
  • chr9.fa: 144,076
  • chr2.fa: 236,953
  • chr9_random.fa: 171
  • chr5.fa: 173,970
  • chr13_random.fa: 2