Basic Statistics
Measure | Value |
---|---|
Filename | 15809_GCCAAT_L001_R1_002.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4000000 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGAAACGAAACTGGAAACCGACCGCCGCCATATCAGAAATCGCATTCA | 4323 | 0.10807499999999999 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTTTT | 10895 | 0.0 | 12.459493 | 1 |
ACGTTA | 1915 | 0.0 | 10.0069895 | 13 |
CGACGT | 885 | 0.0 | 9.72922 | 44 |
CGTAAC | 1325 | 0.0 | 9.521923 | 3 |
AATCCG | 1550 | 0.0 | 8.831139 | 44 |
CGTTAA | 2230 | 0.0 | 8.6983595 | 14 |
CGCAAA | 2395 | 0.0 | 8.586655 | 30 |
GAATCG | 2380 | 0.0 | 8.16334 | 43 |
GACGTT | 2385 | 0.0 | 8.13295 | 12 |
GTCGGG | 2725 | 0.0 | 8.04518 | 1 |
GAATTC | 4050 | 0.0 | 7.706013 | 4 |
ATTCAA | 5455 | 0.0 | 7.577864 | 6 |
ACTTAG | 3625 | 0.0 | 7.3786573 | 6 |
GTAACC | 2345 | 0.0 | 7.2679768 | 4 |
TCGTAA | 2145 | 0.0 | 7.223313 | 2 |
CTTACC | 1630 | 0.0 | 7.1784177 | 33 |
ATCCGC | 2245 | 0.0 | 6.9752064 | 45 |
ACGAAT | 2440 | 0.0 | 6.8942885 | 2 |
GTAACT | 2990 | 0.0 | 6.799781 | 29 |
CTCGTA | 2680 | 0.0 | 6.775574 | 1 |