Basic Statistics
Measure | Value |
---|---|
Filename | 15809_GCCAAT_L001_R1_005.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1258595 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTTTT | 3260 | 0.0 | 10.995449 | 1 |
AATCCG | 470 | 5.857146E-10 | 9.086791 | 44 |
CGTAAC | 490 | 1.1928023E-9 | 8.734292 | 3 |
TAACGT | 405 | 4.3055525E-7 | 8.342696 | 4 |
CGTATC | 505 | 1.8383162E-8 | 8.028812 | 3 |
AGTTGC | 960 | 0.0 | 7.9764338 | 6 |
CGATCA | 875 | 0.0 | 7.7417545 | 34 |
AACGAA | 2140 | 0.0 | 7.6826344 | 6 |
CTGGGA | 1510 | 0.0 | 7.6142426 | 1 |
GAATTC | 1310 | 0.0 | 7.5657434 | 4 |
ATTCAA | 1855 | 0.0 | 7.406056 | 6 |
CGGCCT | 640 | 2.2478162E-9 | 7.397292 | 1 |
GATCTA | 915 | 0.0 | 7.384162 | 5 |
AACCGG | 765 | 2.3192115E-11 | 7.379123 | 33 |
TACGTA | 275 | 0.0027515627 | 7.370736 | 5 |
AACGTC | 495 | 9.444507E-7 | 7.27974 | 5 |
ACGTTA | 840 | 4.092726E-12 | 7.2253103 | 13 |
TTACTC | 840 | 4.092726E-12 | 7.2253103 | 13 |
CGTTAA | 910 | 4.5474735E-13 | 7.163556 | 14 |
TTACGG | 565 | 1.2499686E-7 | 7.1610856 | 20 |