FastQCFastQC Report
Tue 21 Aug 2018
3020_S18_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename3020_S18_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70787388
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACG1321050.028.7802931
ACGATC1346400.028.0216714
CGACGA1619050.023.9022122
GACGAT2055000.018.8777143
TCCGAC1121550.017.086491
CGATCA784150.017.0831185
CGATCC699950.013.0297675
ACGTTA253850.08.1642811
GTGCGC1083200.07.8201884
CACCCG1356700.07.6311896
CGCGAC856450.07.4811661
TGCGCA975250.07.43642235
GGTGCG1383100.07.3114613
GCGCAA1077450.06.72427946
TAGGTA761650.06.41819575
GGGGGG170977550.05.761118145-146
GTAGGT921650.05.43856534
CTTGGC2728850.05.260191
TTGGCA2794900.05.1280472
GCGACC1057350.05.1279862
Produced by FastQC (version 0.11.3)