FastQCFastQC Report
Tue 21 Aug 2018
3701_S16_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename3701_S16_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82698860
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGACG1261350.031.253511
ACGATC1394500.027.9082054
CGACGA1609600.024.5142292
TCCGAC1112050.016.694471
GACGAT2479950.016.2403493
CGATCA882000.015.5520135
CGATCC787950.012.8154795
ACGTTA324400.010.5954631
CGATCT1182500.010.0018255
CGATCG960900.07.9879435
CACCCG1377250.07.0458976
CGTATG3533950.06.14627145-146
CGTTAA597250.05.88939572
GGGGGG163777850.05.6721354145-146
GACTCA2827650.05.64936921
TAATCG797600.05.2690795
TCGTAT6092850.05.052819145-146
Produced by FastQC (version 0.11.3)