chr19	45057481	45057629	mm1450-Ext9bhindbrain-neg--EM10E0680040-EM10E0680041-EM10E0680039-EM10E0680042-EM10E0680043	chr19	45057398	45057629	ENSMUSG00000025212.12_Sfxn3_Perichondrium	0	+
chr19	45057827	45059210	mm1450-Ext9bhindbrain-neg--EM10E0680040-EM10E0680041-EM10E0680039-EM10E0680042-EM10E0680043	chr19	45057827	45059210	ENSMUSG00000025212.12_Sfxn3_Perichondrium	0	+
chr2	25125903	25126886	mm1454-Ext9amidbrain-midbrainpositive-3-4--forebrain-3-4--hindbrain-3-4--neuraltube-4-4--eye-3-4--EM10E0688151-EM10E0688152-EM10E0688153-EM10E0688155-EM10E0688154	chr2	25125903	25126886	ENSMUSG00000087028.3_Gm13387_Endothelial	0	-
chr2	25127187	25127693	mm1454-Ext9amidbrain-midbrainpositive-3-4--forebrain-3-4--hindbrain-3-4--neuraltube-4-4--eye-3-4--EM10E0688151-EM10E0688152-EM10E0688153-EM10E0688155-EM10E0688154	chr2	25127187	25127693	ENSMUSG00000087028.3_Gm13387_Endothelial	0	-
chr12	109947589	109947655	mm1456-Ext9amidbrain-midbrainpositive-6-6--forebrain-6-6--hindbrain-6-6--neuraltube-5-6--EM10E0548509-EM10E0548510-EM10E0548511-EM10E0548512-EM10E0548514-EM10E0548507-EM10E0548508-EM10E0548513	chr12	109947589	109947655	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr12	109947672	109947740	mm1456-Ext9amidbrain-midbrainpositive-6-6--forebrain-6-6--hindbrain-6-6--neuraltube-5-6--EM10E0548509-EM10E0548510-EM10E0548511-EM10E0548512-EM10E0548514-EM10E0548507-EM10E0548508-EM10E0548513	chr12	109947672	109947740	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr12	109947965	109949989	mm1456-Ext9amidbrain-midbrainpositive-6-6--forebrain-6-6--hindbrain-6-6--neuraltube-5-6--EM10E0548509-EM10E0548510-EM10E0548511-EM10E0548512-EM10E0548514-EM10E0548507-EM10E0548508-EM10E0548513	chr12	109947965	109949989	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr12	109950209	109950294	mm1456-Ext9amidbrain-midbrainpositive-6-6--forebrain-6-6--hindbrain-6-6--neuraltube-5-6--EM10E0548509-EM10E0548510-EM10E0548511-EM10E0548512-EM10E0548514-EM10E0548507-EM10E0548508-EM10E0548513	chr12	109950209	109950545	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr11	113785101	113786654	mm1462-Ext9amidbrain-midbrainpositive-8-12--forebrain-7-12--hindbrain-9-12--neuraltube-9-12--trigeminalV-7-12--DRG-7-12--limb-7-12--EM10E0524897-EM10E0524898-EM10E0524899-EM10E0524900-EM10E0524901-EM10E0524902	chr11	113785101	113786654	ENSMUSG00000041592.12_Sdk2_Chondrocyte	0	-
chr15	91017632	91017835	mm1478-Ext9bhindbrain-hindbrainpositive-3-4--forebrain-3-4--midbrain-3-4--neuraltube-3-4--EM10E0609140-EM10E0609141-EM10E0609142-EM10E0609143-EM10E0609144	chr15	91017632	91017835	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr15	91017925	91018097	mm1478-Ext9bhindbrain-hindbrainpositive-3-4--forebrain-3-4--midbrain-3-4--neuraltube-3-4--EM10E0609140-EM10E0609141-EM10E0609142-EM10E0609143-EM10E0609144	chr15	91017925	91018097	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr15	91018585	91018646	mm1478-Ext9bhindbrain-hindbrainpositive-3-4--forebrain-3-4--midbrain-3-4--neuraltube-3-4--EM10E0609140-EM10E0609141-EM10E0609142-EM10E0609143-EM10E0609144	chr15	91018585	91018646	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr17	29355610	29357019	mm1479-Ext9amidbrain-neg--EM10E0637937-EM10E0637938-EM10E0637939-EM10E0637940-	chr17	29355610	29357019	ENSMUSG00000024013.10_Fgd2_EMP_Macrophage	0	+
chr6	112810013	112810198	mm1480-Ext9amidbrain-midbrainpositive-4-5--forebrain-5-5--EM10E0831080-EM10E0831081-EM10E0831082-EM10E0831079-EM10E0831083	chr6	112810013	112810198	ENSMUSG00000030257.12_Srgap3_Perichondrium	0	-
chr4	108361057	108361132	mm1490-Ext9climb-limbpositive-7-7--midbrain-7-7--neuraltube-7-7--facialmesenchyme-7-7--hindbrain-7-7--nose-7-7--branchialarch-6-7--somite-5-7--genitaltubercle-7-7--EM10E0484572-EM10E0484574-EM10E0484575-EM10E0484576-EM10E0484570-EM10E0484571-EM10E0484573-EM10E0484577-EM10E0484578-EM10E0484579	chr4	108361057	108361132	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108361846	108361904	mm1490-Ext9climb-limbpositive-7-7--midbrain-7-7--neuraltube-7-7--facialmesenchyme-7-7--hindbrain-7-7--nose-7-7--branchialarch-6-7--somite-5-7--genitaltubercle-7-7--EM10E0484572-EM10E0484574-EM10E0484575-EM10E0484576-EM10E0484570-EM10E0484571-EM10E0484573-EM10E0484577-EM10E0484578-EM10E0484579	chr4	108361846	108361904	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108362424	108363699	mm1490-Ext9climb-limbpositive-7-7--midbrain-7-7--neuraltube-7-7--facialmesenchyme-7-7--hindbrain-7-7--nose-7-7--branchialarch-6-7--somite-5-7--genitaltubercle-7-7--EM10E0484572-EM10E0484574-EM10E0484575-EM10E0484576-EM10E0484570-EM10E0484571-EM10E0484573-EM10E0484577-EM10E0484578-EM10E0484579	chr4	108362424	108363699	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108363769	108364432	mm1490-Ext9climb-limbpositive-7-7--midbrain-7-7--neuraltube-7-7--facialmesenchyme-7-7--hindbrain-7-7--nose-7-7--branchialarch-6-7--somite-5-7--genitaltubercle-7-7--EM10E0484572-EM10E0484574-EM10E0484575-EM10E0484576-EM10E0484570-EM10E0484571-EM10E0484573-EM10E0484577-EM10E0484578-EM10E0484579	chr4	108363769	108364432	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr16	44530317	44530500	mm1504-Ext9amidbrain-midbrainpositive-4-5--hindbrain-4-5--forebrain-4-5--neuraltube-4-5--EM10E0624125-EM10E0624126-EM10E0624127-EM10E0624122-EM10E0624123-EM10E0624124-EM10E0624128-EM10E0624129-EM10E0624130	chr16	44530317	44530500	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr16	44530838	44531344	mm1504-Ext9amidbrain-midbrainpositive-4-5--hindbrain-4-5--forebrain-4-5--neuraltube-4-5--EM10E0624125-EM10E0624126-EM10E0624127-EM10E0624122-EM10E0624123-EM10E0624124-EM10E0624128-EM10E0624129-EM10E0624130	chr16	44530838	44531344	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr16	44531388	44531720	mm1504-Ext9amidbrain-midbrainpositive-4-5--hindbrain-4-5--forebrain-4-5--neuraltube-4-5--EM10E0624125-EM10E0624126-EM10E0624127-EM10E0624122-EM10E0624123-EM10E0624124-EM10E0624128-EM10E0624129-EM10E0624130	chr16	44531388	44531720	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr16	44533774	44533918	mm1504-Ext9amidbrain-midbrainpositive-4-5--hindbrain-4-5--forebrain-4-5--neuraltube-4-5--EM10E0624125-EM10E0624126-EM10E0624127-EM10E0624122-EM10E0624123-EM10E0624124-EM10E0624128-EM10E0624129-EM10E0624130	chr16	44533774	44533918	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr4	148859767	148860688	mm1532-Ext9bhindbrain-hindbrainpositive-5-5--cranialnerve-3-5--EM10E0908740-EM10E0908741-EM10E0908742-EM10E0908743-EM10E0908739	chr4	148859767	148860688	ENSMUSG00000028977.12_Casz1_Muscle3	0	+
chr7	93060869	93061305	mm1534-Ext9bhindbrain-hindbrainpositive-4-5--forebrain-5-5--neuraltube-5-5--midbrain-4-5--EM10E0698267-EM10E0698266	chr7	93060455	93061305	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr7	93061519	93061875	mm1534-Ext9bhindbrain-hindbrainpositive-4-5--forebrain-5-5--neuraltube-5-5--midbrain-4-5--EM10E0698267-EM10E0698266	chr7	93061519	93061875	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr7	93061889	93061951	mm1534-Ext9bhindbrain-hindbrainpositive-4-5--forebrain-5-5--neuraltube-5-5--midbrain-4-5--EM10E0698267-EM10E0698266	chr7	93061889	93061951	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr7	93061953	93062770	mm1534-Ext9bhindbrain-hindbrainpositive-4-5--forebrain-5-5--neuraltube-5-5--midbrain-4-5--EM10E0698267-EM10E0698266	chr7	93061953	93062770	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr1	9648564	9648831	mm1546-Ext9amidbrain-midbrainpositive-6-8--hindbrain-7-8--trigeminalV-6-8--neuraltube-5-8--DRG-4-8--cranialnerve-5-8--EM10E0799261-EM10E0799262-EM10E0799263-EM10E0799264	chr1	9648564	9648831	ENSMUSG00000079671.4_2610203C22Rik_Endothelial_Macrophage	0	-
chr1	9648871	9649710	mm1546-Ext9amidbrain-midbrainpositive-6-8--hindbrain-7-8--trigeminalV-6-8--neuraltube-5-8--DRG-4-8--cranialnerve-5-8--EM10E0799261-EM10E0799262-EM10E0799263-EM10E0799264	chr1	9648871	9649710	ENSMUSG00000079671.4_2610203C22Rik_Endothelial_Macrophage	0	-
chr5	140767699	140768134	mm1550-Ext9amidbrain-neg--EM10E0524645-EM10E0524646-EM10E0524647-EM10E0524648-	chr5	140767699	140768134	ENSMUSG00000050022.12_Amz1_Macrophage	0	+
chr6	144166031	144166883	mm1551-Ext9amidbrain-neg--EM10E0630316-EM10E0630317-EM10E0630314-EM10E0630315-EM10E0630318-EM10E0630319	chr6	144166031	144166883	ENSMUSG00000041540.12_Sox5_Chondrocyte	0	-
chr13	76810538	76810843	mm1556-Ext9amidbrain-otherpositive-forebrain-3-3--hindbrain-3-3--EM10E0743955-EM10E0743956-EM10E0743957-EM10E0743958	chr13	76810538	76810843	ENSMUSG00000021596.12_Mctp1_EMP_Macrophage	0	+
chr6	5802398	5803552	mm1559-Ext9climb-neg--EM10E0609842-EM10E0609839-EM10E0609840-EM10E0609841-EM10E0609843	chr6	5802398	5803552	ENSMUSG00000029757.12_Dync1i1_Muscle3	0	+
chr10	38972347	38972567	mm1573-Ext9climb-neg--EM10E0438671-EM10E0438672-	chr10	38972347	38972567	ENSMUSG00000019846.7_Lama4_Perichondrium	0	+
chr10	38972791	38972841	mm1573-Ext9climb-neg--EM10E0438671-EM10E0438672-	chr10	38972791	38972841	ENSMUSG00000019846.7_Lama4_Perichondrium	0	+
chr10	38973023	38973430	mm1573-Ext9climb-neg--EM10E0438671-EM10E0438672-	chr10	38973023	38973430	ENSMUSG00000019846.7_Lama4_Perichondrium	0	+
chr12	73511347	73512172	mm1595-Ext9climb-neg---EM10E0825339	chr12	73511347	73512172	ENSMUSG00000034435.5_Tmem30b_Muscle1	0	-