chr10	38972347	38972567	>Mouse-chr10-38691885-38693911---element-1573---negative-	chr10	38972347	38972567	ENSMUSG00000019846.7_Lama4_Perichondrium	0	+
chr10	38972791	38972841	>Mouse-chr10-38691885-38693911---element-1573---negative-	chr10	38972791	38972841	ENSMUSG00000019846.7_Lama4_Perichondrium	0	+
chr10	38973023	38973430	>Mouse-chr10-38691885-38693911---element-1573---negative-	chr10	38973023	38973430	ENSMUSG00000019846.7_Lama4_Perichondrium	0	+
chr10	45229738	45230544	>Mouse-chr10-44948419-44951592---element-87---positive----limb[4/7]---heart[7/7]---other[4/7]	chr10	45229738	45230544	ENSMUSG00000019848.10_Popdc3_Muscle3	0	+
chr10	45230567	45230768	>Mouse-chr10-44948419-44951592---element-87---positive----limb[4/7]---heart[7/7]---other[4/7]	chr10	45230567	45230768	ENSMUSG00000019848.10_Popdc3_Muscle3	0	+
chr10	45231096	45231294	>Mouse-chr10-44948419-44951592---element-87---positive----limb[4/7]---heart[7/7]---other[4/7]	chr10	45231096	45231294	ENSMUSG00000019848.10_Popdc3_Muscle3	0	+
chr10	52742536	52743161	>Mouse-chr10-52461618-52464960---element-782---positive----neural-tube[7/9]---hindbrain-(rhombencephalon)[7/9]---midbrain-(mesencephalon)[7/9]---forebrain[7/9]	chr10	52742536	52743161	ENSMUSG00000038602.7_Slc35f1_NeuralCrest	0	+
chr10	60813778	60816350	>Mouse-chr10-60276526-60279591---element-1663---positive----forebrain[4/5]---heart[5/5]---facial-mesenchyme[3/5]---ear[4/5]	chr10	60812934	60816350	ENSMUSG00000020099.7_Unc5b_Mesenchyme	0	-
chr11	112412085	112413115	>Mouse-chr11-112273179-112274981---element-634---positive----limb[9/10]---branchial-arch[5/10]	chr11	112412085	112413115	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112449673	112449973	>Mouse-chr11-112310843-112312735---element-1285---negative-	chr11	112449673	112449973	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112450143	112450761	>Mouse-chr11-112310843-112312735---element-1285---negative-	chr11	112450143	112450761	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112780251	112780786	>Mouse-chr11-112641565-112642353---element-635---positive----branchial-arch[5/13]	chr11	112779167	112780786	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112780787	112781039	>Mouse-chr11-112641565-112642353---element-635---positive----branchial-arch[5/13]	chr11	112780787	112785588	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	113785101	113786654	>Mouse-chr11-113644681-113649107---element-1462---positive----neural-tube[9/12]---hindbrain-(rhombencephalon)[9/12]---midbrain-(mesencephalon)[8/12]---dorsal-root-ganglion[7/12]---forebrain[7/12]---limb[7/12]---trigeminal-V-(ganglion,-cranial)[7/12]	chr11	113785101	113786654	ENSMUSG00000041592.12_Sdk2_Chondrocyte	0	-
chr1	132333367	132334374	>Mouse-chr1-134229247-134231039---element-505---positive----hindbrain-(rhombencephalon)[9/9]---forebrain[8/9]	chr1	132333367	132334374	ENSMUSG00000009772.11_Nuak2_Macrophage	0	+
chr1	184041899	184042026	>Mouse-chr1-185865149-185866641---element-134---positive----eye[5/10]---heart[8/10]	chr1	184041899	184042026	ENSMUSG00000039384.8_Dusp10_Perichondrium	0	+
chr11	98902563	98903196	>Mouse-chr11-98762967-98767955---element-1323---positive----other[5/7]	chr11	98902563	98903196	ENSMUSG00000017499.11_Cdc6_Muscle1	0	+
chr12	104939330	104940069	>Mouse-chr12-106177540-106178279---element-6---negative-	chr12	104938837	104940210	ENSMUSG00000100975.1_Gm28875_Muscle3	0	-
chr12	109508906	109510175	>Mouse-chr12-110746134-110749179---element-799---positive----midbrain-(mesencephalon)[5/5]---forebrain[5/5]	chr12	109508906	109510175	ENSMUSG00000021268.13_Meg3_Perichondrium	0	+
chr12	109947589	109947655	>Mouse-chr12-111184714-111188504---element-1456---positive----neural-tube[5/6]---hindbrain-(rhombencephalon)[6/6]---midbrain-(mesencephalon)[6/6]---forebrain[6/6]	chr12	109947589	109947655	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr12	109947672	109947740	>Mouse-chr12-111184714-111188504---element-1456---positive----neural-tube[5/6]---hindbrain-(rhombencephalon)[6/6]---midbrain-(mesencephalon)[6/6]---forebrain[6/6]	chr12	109947672	109947740	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr12	109947965	109949989	>Mouse-chr12-111184714-111188504---element-1456---positive----neural-tube[5/6]---hindbrain-(rhombencephalon)[6/6]---midbrain-(mesencephalon)[6/6]---forebrain[6/6]	chr12	109947965	109949989	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr12	109950209	109950294	>Mouse-chr12-111184714-111188504---element-1456---positive----neural-tube[5/6]---hindbrain-(rhombencephalon)[6/6]---midbrain-(mesencephalon)[6/6]---forebrain[6/6]	chr12	109950209	109950545	ENSMUSG00000097391.4_Mirg_Perichondrium	0	+
chr12	73511347	73512172	>Mouse-chr12-74611486-74614036---element-1595---negative-	chr12	73511347	73512172	ENSMUSG00000034435.5_Tmem30b_Muscle1	0	-
chr13	111953675	111954917	>Mouse-chr13-112743108-112745779---element-45---positive----forebrain[10/15]---limb[14/15]	chr13	111953675	111954917	ENSMUSG00000082433.1_Gm9025_Macrophage	0	-
chr13	16011441	16012852	>Mouse-chr13-16102853-16104685---element-653---negative-	chr13	16011441	16013544	ENSMUSG00000041324.9_Inhba_Perichondrium	0	+
chr13	37310995	37313794	>Mouse-chr13-37402835-37405679---element-979---positive----hindbrain-(rhombencephalon)[9/11]---dorsal-root-ganglion[4/11]---trigeminal-V-(ganglion,-cranial)[3/11]	chr13	37310995	37313794	ENSMUSG00000021423.5_Ly86_Macrophage	0	+
chr13	46571320	46571590	>Mouse-chr13-46666689-46669718---element-132---positive----somite[6/7]---midbrain-(mesencephalon)[6/7]---branchial-arch[5/7]---eye[6/7]---heart[7/7]	chr13	46571022	46571590	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	46571956	46572432	>Mouse-chr13-46666689-46669718---element-132---positive----somite[6/7]---midbrain-(mesencephalon)[6/7]---branchial-arch[5/7]---eye[6/7]---heart[7/7]	chr13	46571956	46572432	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	46633401	46633644	>Mouse-chr13-46727660-46731161---element-813---negative-	chr13	46633401	46633644	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	46633700	46634404	>Mouse-chr13-46727660-46731161---element-813---negative-	chr13	46633700	46634404	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	59091221	59091422	>Mouse-chr13-59191545-59195519---element-14---positive----hindbrain-(rhombencephalon)[5/6]---midbrain-(mesencephalon)[5/6]---forebrain[5/6]	chr13	59091221	59091422	ENSMUSG00000055254.10_Ntrk2_Perichondrium	0	+
chr13	59092679	59093230	>Mouse-chr13-59191545-59195519---element-14---positive----hindbrain-(rhombencephalon)[5/6]---midbrain-(mesencephalon)[5/6]---forebrain[5/6]	chr13	59092679	59093230	ENSMUSG00000055254.10_Ntrk2_Perichondrium	0	+
chr13	63627166	63627962	>Mouse-chr13-63727252-63729759---element-702---positive----hindbrain-(rhombencephalon)[14/17]---midbrain-(mesencephalon)[14/17]---cranial-nerve[7/17]	chr13	63627166	63627962	ENSMUSG00000021466.7_Ptch1_Chondrocyte	0	-
chr13	76810538	76810843	>Mouse-chr13-76949140-76951140---element-1556---positive----hindbrain-(rhombencephalon)[3/5]---forebrain[3/5]	chr13	76810538	76810843	ENSMUSG00000021596.12_Mctp1_EMP_Macrophage	0	+
chr14	22113417	22115951	>Mouse-chr14-22932437-22935173---element-414---positive----midbrain-(mesencephalon)[17/17]---forebrain[8/17]---limb[15/17]---branchial-arch[17/17]---eye[17/17]	chr14	22113417	22116980	ENSMUSG00000063458.8_1700112E06Rik_EMP	0	+
chr15	13392328	13392660	>Mouse-chr15-13321649-13325391---element-13---positive----hindbrain-(rhombencephalon)[6/7]---forebrain[6/7]---limb[4/7]---nose[4/7]	chr15	13392328	13392660	ENSMUSG00000039385.4_Cdh6_NeuralCrest	0	-
chr15	13392827	13393638	>Mouse-chr15-13321649-13325391---element-13---positive----hindbrain-(rhombencephalon)[6/7]---forebrain[6/7]---limb[4/7]---nose[4/7]	chr15	13392827	13393638	ENSMUSG00000039385.4_Cdh6_NeuralCrest	0	-
chr15	62902944	62903713	>Mouse-chr15-62734249-62735455---element-457---positive----neural-tube[4/7]	chr15	62902944	62903713	ENSMUSG00000097039.4_Pvt1_Muscle1	0	+
chr15	66825281	66825399	>Mouse-chr15-66655863-66658724---element-104---positive----heart[7/7]---melanocytes[5/7]---liver[3/7]	chr15	66825281	66825399	ENSMUSG00000022372.10_Sla_EMP_Macrophage	0	-
chr15	66825673	66825808	>Mouse-chr15-66655863-66658724---element-104---positive----heart[7/7]---melanocytes[5/7]---liver[3/7]	chr15	66825673	66825808	ENSMUSG00000022372.10_Sla_EMP_Macrophage	0	-
chr15	91017632	91017835	>Mouse-chr15-90846953-90850479---element-1478---positive----neural-tube[3/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]	chr15	91017632	91017835	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr15	91017925	91018097	>Mouse-chr15-90846953-90850479---element-1478---positive----neural-tube[3/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]	chr15	91017925	91018097	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr15	91018585	91018646	>Mouse-chr15-90846953-90850479---element-1478---positive----neural-tube[3/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]	chr15	91018585	91018646	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr16	15054450	15054937	>Mouse-chr16-15054543-15055683---element-382---negative-	chr16	15051528	15054937	ENSMUSG00000068617.4_Efcab1_Chondrocyte	0	+
chr16	15055257	15055590	>Mouse-chr16-15054543-15055683---element-382---negative-	chr16	15055257	15056136	ENSMUSG00000068617.4_Efcab1_Chondrocyte	0	+
chr16	44530317	44530500	>Mouse-chr16-44528859-44534627---element-1504---positive----neural-tube[4/5]---hindbrain-(rhombencephalon)[4/5]---midbrain-(mesencephalon)[4/5]---forebrain[4/5]	chr16	44530317	44530500	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr16	44530838	44531344	>Mouse-chr16-44528859-44534627---element-1504---positive----neural-tube[4/5]---hindbrain-(rhombencephalon)[4/5]---midbrain-(mesencephalon)[4/5]---forebrain[4/5]	chr16	44530838	44531344	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr16	44531388	44531720	>Mouse-chr16-44528859-44534627---element-1504---positive----neural-tube[4/5]---hindbrain-(rhombencephalon)[4/5]---midbrain-(mesencephalon)[4/5]---forebrain[4/5]	chr16	44531388	44531720	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr16	44533774	44533918	>Mouse-chr16-44528859-44534627---element-1504---positive----neural-tube[4/5]---hindbrain-(rhombencephalon)[4/5]---midbrain-(mesencephalon)[4/5]---forebrain[4/5]	chr16	44533774	44533918	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr16	44631515	44633603	>Mouse-chr16-44631628-44633739---element-1301---negative-	chr16	44628945	44633603	ENSMUSG00000022687.7_Boc_Perichondrium	0	-
chr17	29355610	29357019	>Mouse-chr17-29491795-29494823---element-1479---negative-	chr17	29355610	29357019	ENSMUSG00000024013.10_Fgd2_EMP_Macrophage	0	+
chr17	44722492	44722690	>Mouse-chr17-44859063-44860738---element-657---positive----branchial-arch[3/6]	chr17	44722492	44722690	ENSMUSG00000039153.12_Runx2_Chondrocyte	0	-
chr17	48436574	48436929	>Mouse-chr17-48575655-48577860---element-243---positive----heart[5/5]	chr17	48436574	48436929	ENSMUSG00000040694.3_Apobec2_Muscle3	0	-
chr17	48437222	48438017	>Mouse-chr17-48575655-48577860---element-243---positive----heart[5/5]	chr17	48437222	48438017	ENSMUSG00000040694.3_Apobec2_Muscle3	0	-
chr1	74815067	74815253	>Mouse-chr1-74861638-74864881---element-1017---positive----heart[3/9]	chr1	74815067	74815253	ENSMUSG00000026167.10_Wnt10a_Epithelial	0	+
chr1	74816389	74817545	>Mouse-chr1-74861638-74864881---element-1017---positive----heart[3/9]	chr1	74816389	74817545	ENSMUSG00000026167.10_Wnt10a_Epithelial	0	+
chr17	69181280	69181888	>Mouse-chr17-69529964-69531837---element-1658---positive----tail[6/8]	chr17	69181280	69181888	ENSMUSG00000024044.11_Epb4.1l3_Perichondrium	0	+
chr17	7269179	7269426	>Mouse-chr17-7472842-7474317---element-108---positive----nose[3/4]---heart[4/4]---liver[3/4]	chr17	7269179	7269426	ENSMUSG00000023809.9_Rps6ka2_Muscle3	0	+
chr1	78187095	78188220	>Mouse-chr1-78183670-78184795---element-1094---negative-	chr1	78186834	78194272	ENSMUSG00000004872.11_Pax3_Muscle1	0	-
chr1	84549338	84550654	>Mouse-chr1-84545385-84547922---element-666---negative-	chr1	84549338	84550654	ENSMUSG00000036766.8_Dner_Muscle3	0	-
chr18	60669172	60671565	>Mouse-chr18-60828749-60831461---element-1623---positive----limb[3/5]---ear[3/5]	chr18	60669172	60671565	ENSMUSG00000043079.13_Synpo_Chondrocyte	0	-
chr18	68058878	68059704	>Mouse-chr18-68218430-68219367---element-304---positive----heart[4/6]	chr18	68058878	68059704	ENSMUSG00000024544.8_Ldlrad4_Perichondrium	0	+
chr18	9215673	9216934	>Mouse-chr18-9215671-9216932---element-1632---positive----neural-tube[5/5]---midbrain-(mesencephalon)[5/5]---forebrain[4/5]	chr18	9215598	9216973	ENSMUSG00000036904.5_Fzd8_ChondrocytePerichondrium	0	+
chr19	32106895	32106961	>Mouse-chr19-32181141-32182808---element-1654---positive----heart[3/7]	chr19	32106895	32106961	ENSMUSG00000024887.9_Asah2_Endothelial	0	-
chr19	32107290	32107396	>Mouse-chr19-32181141-32182808---element-1654---positive----heart[3/7]	chr19	32107290	32107396	ENSMUSG00000024887.9_Asah2_Endothelial	0	-
chr19	32107413	32108318	>Mouse-chr19-32181141-32182808---element-1654---positive----heart[3/7]	chr19	32107413	32108517	ENSMUSG00000024887.9_Asah2_Endothelial	0	-
chr19	45057481	45057629	>Mouse-chr19-45131971-45134332---element-1450---negative-	chr19	45057398	45057629	ENSMUSG00000025212.12_Sfxn3_Perichondrium	0	+
chr19	45057827	45059210	>Mouse-chr19-45131971-45134332---element-1450---negative-	chr19	45057827	45059210	ENSMUSG00000025212.12_Sfxn3_Perichondrium	0	+
chr19	47301206	47302242	>Mouse-chr19-47375696-47376732---element-1098---positive----hindbrain-(rhombencephalon)[12/16]---somite[8/16]---midbrain-(mesencephalon)[12/16]	chr19	47301092	47302712	ENSMUSG00000006435.11_Neurl1a_Muscle3	0	+
chr19	58372244	58372300	>Mouse-chr19-58446412-58447552---element-445---positive----limb[5/7]---eye[7/7]---facial-mesenchyme[7/7]	chr19	58372244	58372300	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr19	58372302	58372581	>Mouse-chr19-58446412-58447552---element-445---positive----limb[5/7]---eye[7/7]---facial-mesenchyme[7/7]	chr19	58372302	58372581	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr19	58372659	58373062	>Mouse-chr19-58446412-58447552---element-445---positive----limb[5/7]---eye[7/7]---facial-mesenchyme[7/7]	chr19	58372659	58373165	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr19	58419296	58420158	>Mouse-chr19-58493721-58494961---element-916---positive----other[5/6]	chr19	58419296	58420158	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr19	59423576	59424379	>Mouse-chr19-59497704-59500060---element-448---positive----limb[5/5]---nose[5/5]---facial-mesenchyme[5/5]	chr19	59423576	59424379	ENSMUSG00000043969.4_Emx2_Perichondrium	0	+
chr19	59424472	59425570	>Mouse-chr19-59497704-59500060---element-448---positive----limb[5/5]---nose[5/5]---facial-mesenchyme[5/5]	chr19	59424472	59425805	ENSMUSG00000043969.4_Emx2_Perichondrium	0	+
chr1	9648564	9648831	>Mouse-chr1-9638304-9641046---element-1546---positive----neural-tube[5/8]---hindbrain-(rhombencephalon)[7/8]---midbrain-(mesencephalon)[6/8]---dorsal-root-ganglion[4/8]---trigeminal-V-(ganglion,-cranial)[6/8]---cranial-nerve[5/8]	chr1	9648564	9648831	ENSMUSG00000079671.4_2610203C22Rik_Endothelial_Macrophage	0	-
chr1	9648871	9649710	>Mouse-chr1-9638304-9641046---element-1546---positive----neural-tube[5/8]---hindbrain-(rhombencephalon)[7/8]---midbrain-(mesencephalon)[6/8]---dorsal-root-ganglion[4/8]---trigeminal-V-(ganglion,-cranial)[6/8]---cranial-nerve[5/8]	chr1	9648871	9649710	ENSMUSG00000079671.4_2610203C22Rik_Endothelial_Macrophage	0	-
chr2	128210966	128212127	>Mouse-chr2-128036470-128038306---element-1004---negative-	chr2	128210966	128212127	ENSMUSG00000085750.1_Gm14009_Endothelial	0	+
chr2	168693998	168695204	>Mouse-chr2-168518619-168521392---element-1375---positive----neural-tube[3/5]---hindbrain-(rhombencephalon)[4/5]	chr2	168693998	168695204	ENSMUSG00000027546.11_Atp9a_Perichondrium	0	-
chr2	25125903	25126886	>Mouse-chr2-24980365-24983610---element-1454---positive----neural-tube[4/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]---eye[3/4]	chr2	25125903	25126886	ENSMUSG00000087028.3_Gm13387_Endothelial	0	-
chr2	25127187	25127693	>Mouse-chr2-24980365-24983610---element-1454---positive----neural-tube[4/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]---eye[3/4]	chr2	25127187	25127693	ENSMUSG00000087028.3_Gm13387_Endothelial	0	-
chr2	32908294	32908677	>Mouse-chr2-32763799-32765044---element-238---negative-	chr2	32908294	32908677	ENSMUSG00000026796.12_Fam129b_Chondrocyte	0	+
chr2	32908829	32909029	>Mouse-chr2-32763799-32765044---element-238---negative-	chr2	32908829	32909029	ENSMUSG00000026796.12_Fam129b_Chondrocyte	0	+
chr2	59598694	59601259	>Mouse-chr2-59435993-59439506---element-717---positive----limb[9/9]---branchial-arch[3/9]	chr2	59598694	59601259	ENSMUSG00000035168.12_Tanc1_Mesenchyme	0	+
chr2	59601263	59601314	>Mouse-chr2-59435993-59439506---element-717---positive----limb[9/9]---branchial-arch[3/9]	chr2	59601263	59601314	ENSMUSG00000035168.12_Tanc1_Mesenchyme	0	+
chr2	59828773	59829361	>Mouse-chr2-59666830-59667418---element-282---positive----heart[4/5]	chr2	59828571	59829704	ENSMUSG00000035168.12_Tanc1_Mesenchyme	0	+
chr3	121953542	121954312	>Mouse-chr3-121656460-121657309---element-434---negative-	chr3	121952937	121954312	ENSMUSG00000039831.12_Arhgap29_Muscle2_3	0	+
chr3	35102654	35102720	>Mouse-chr3-35001233-35002696---element-639---negative-	chr3	35102654	35102720	ENSMUSG00000074637.6_Sox2_NeuralCrest	0	+
chr3	35103043	35103596	>Mouse-chr3-35001233-35002696---element-639---negative-	chr3	35103043	35103596	ENSMUSG00000074637.6_Sox2_NeuralCrest	0	+
chr4	108361057	108361132	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108361057	108361132	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108361846	108361904	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108361846	108361904	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108362424	108363699	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108362424	108363699	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108363769	108364432	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108363769	108364432	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	119239085	119239727	>Mouse-chr4-118911390-118912802---element-586---negative-	chr4	119239085	119239727	ENSMUSG00000028641.12_Lepre1_ChondrocytePerichondrium	0	+
chr4	135205845	135206824	>Mouse-chr4-134761760-134763122---element-23---negative-	chr4	135205767	135206824	ENSMUSG00000070691.6_Runx3_Chondrocyte	0	+
chr4	148859767	148860688	>Mouse-chr4-148233580-148235065---element-1532---positive----hindbrain-(rhombencephalon)[5/6]---cranial-nerve[3/6]	chr4	148859767	148860688	ENSMUSG00000028977.12_Casz1_Muscle3	0	+
chr4	154471428	154472175	>Mouse-chr4-153845537-153848227---element-1087---positive----neural-tube[5/7]---hindbrain-(rhombencephalon)[5/7]---midbrain-(mesencephalon)[5/7]---forebrain[5/7]---limb[5/7]	chr4	154470483	154472175	ENSMUSG00000039410.12_Prdm16_Mesenchyme	0	-
chr4	154472472	154473032	>Mouse-chr4-153845537-153848227---element-1087---positive----neural-tube[5/7]---hindbrain-(rhombencephalon)[5/7]---midbrain-(mesencephalon)[5/7]---forebrain[5/7]---limb[5/7]	chr4	154472472	154473032	ENSMUSG00000039410.12_Prdm16_Mesenchyme	0	-
chr4	154473686	154473957	>Mouse-chr4-153845537-153848227---element-1087---positive----neural-tube[5/7]---hindbrain-(rhombencephalon)[5/7]---midbrain-(mesencephalon)[5/7]---forebrain[5/7]---limb[5/7]	chr4	154473686	154473957	ENSMUSG00000039410.12_Prdm16_Mesenchyme	0	-
chr4	62612531	62613743	>Mouse-chr4-62272177-62276366---element-1311---negative-	chr4	62612531	62613743	ENSMUSG00000059810.14_Rgs3_Chondrocyte	0	+
chr4	62613750	62613850	>Mouse-chr4-62272177-62276366---element-1311---negative-	chr4	62613750	62613850	ENSMUSG00000059810.14_Rgs3_Chondrocyte	0	+
chr4	62614718	62614828	>Mouse-chr4-62272177-62276366---element-1311---negative-	chr4	62614718	62614828	ENSMUSG00000059810.14_Rgs3_Chondrocyte	0	+
chr4	66894617	66895082	>Mouse-chr4-66555426-66556324---element-279---positive----facial-mesenchyme[8/8]	chr4	66894617	66895082	ENSMUSG00000039005.9_Tlr4_Endothelial_Macrophage	0	+
chr4	66895084	66895290	>Mouse-chr4-66555426-66556324---element-279---positive----facial-mesenchyme[8/8]	chr4	66895084	66895403	ENSMUSG00000039005.9_Tlr4_Endothelial_Macrophage	0	+
chr4	82916051	82916104	>Mouse-chr4-82561277-82564175---element-56---positive----forebrain[4/5]	chr4	82916051	82916104	ENSMUSG00000059049.10_Frem1_Muscle2	0	-
chr4	82916417	82916710	>Mouse-chr4-82561277-82564175---element-56---positive----forebrain[4/5]	chr4	82916417	82916710	ENSMUSG00000059049.10_Frem1_Muscle2	0	-
chr4	97647762	97648486	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97647762	97648486	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr4	97648819	97649141	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97648819	97649141	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr4	97649150	97649270	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97649150	97649270	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr4	97649278	97649552	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97649278	97649552	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr4	97868300	97869519	>Mouse-chr4-97534796-97536607---element-1703---negative-	chr4	97868300	97869519	ENSMUSG00000028565.14_Nfia_Perichondrium	0	+
chr5	140767699	140768134	>Mouse-chr5-141243002-141245006---element-1550---negative-	chr5	140767699	140768134	ENSMUSG00000050022.12_Amz1_Macrophage	0	+
chr5	21496259	21497140	>Mouse-chr5-21001718-21003173---element-391---negative-	chr5	21496259	21497140	ENSMUSG00000039883.4_Lrrc17_ChondrocytePerichondrium	0	+
chr5	21497142	21497198	>Mouse-chr5-21001718-21003173---element-391---negative-	chr5	21497142	21497198	ENSMUSG00000039883.4_Lrrc17_ChondrocytePerichondrium	0	+
chr5	37818652	37819645	>Mouse-chr5-38209891-38210884---element-425---positive----neural-tube[5/11]	chr5	37816753	37820361	ENSMUSG00000048450.10_Msx1_Mesenchyme	0	-
chr5	37825669	37829220	>Mouse-chr5-38216908-38220459---element-426---positive----hindbrain-(rhombencephalon)[7/9]---somite[7/9]---midbrain-(mesencephalon)[9/9]---limb[9/9]---branchial-arch[7/9]---eye[5/9]---nose[9/9]---genital-tubercle[5/9]---facial-mesenchyme[8/9]---ear[3/9]	chr5	37825039	37830166	ENSMUSG00000048450.10_Msx1_Mesenchyme	0	-
chr5	37901589	37902420	>Mouse-chr5-38292345-38293732---element-427---positive----nose[4/4]---facial-mesenchyme[4/4]	chr5	37901589	37902420	ENSMUSG00000048450.10_Msx1_Mesenchyme	0	-
chr5	37917748	37918594	>Mouse-chr5-38308981-38309833---element-428---positive----limb[4/5]---branchial-arch[4/5]---genital-tubercle[4/5]---facial-mesenchyme[4/5]	chr5	37917748	37918666	ENSMUSG00000048450.10_Msx1_Mesenchyme	0	-
chr5	64877116	64877769	>Mouse-chr5-65268023-65270020---element-1725---positive----dorsal-root-ganglion[4/10]---trigeminal-V-(ganglion,-cranial)[4/10]---cranial-nerve[4/10]	chr5	64877116	64877769	ENSMUSG00000044827.6_Tlr1_Macrophage	0	-
chr5	64877795	64878781	>Mouse-chr5-65268023-65270020---element-1725---positive----dorsal-root-ganglion[4/10]---trigeminal-V-(ganglion,-cranial)[4/10]---cranial-nerve[4/10]	chr5	64877795	64878862	ENSMUSG00000044827.6_Tlr1_Macrophage	0	-
chr5	77486940	77489925	>Mouse-chr5-77915965-77918950---element-1340---positive----hindbrain-(rhombencephalon)[5/9]---forebrain[4/9]---limb[7/9]	chr5	77485587	77489931	ENSMUSG00000036256.9_Igfbp7_ChondrocytePerichondrium	0	-
chr5	99368804	99369560	>Mouse-chr5-99796912-99799425---element-678---positive----limb[7/8]	chr5	99368804	99369560	ENSMUSG00000029333.10_Rasgef1b_Mesenchyme	0	-
chr6	112810013	112810198	>Mouse-chr6-112758522-112762994---element-1480---positive----midbrain-(mesencephalon)[4/5]---forebrain[5/5]	chr6	112810013	112810198	ENSMUSG00000030257.12_Srgap3_Perichondrium	0	-
chr6	117279832	117280409	>Mouse-chr6-117229227-117230427---element-247---positive----other[7/13]	chr6	117279832	117280525	ENSMUSG00000061353.7_Cxcl12_Perichondrium	0	+
chr6	122491024	122492392	>Mouse-chr6-122441040-122442410---element-1698---negative-	chr6	122491024	122493270	ENSMUSG00000040649.11_Rimklb_Mesenchyme	0	-
chr6	144166031	144166883	>Mouse-chr6-144114203-144116223---element-1551---negative-	chr6	144166031	144166883	ENSMUSG00000041540.12_Sox5_Chondrocyte	0	-
chr6	51857621	51858253	>Mouse-chr6-51807234-51808613---element-412---positive----neural-tube[4/11]	chr6	51857621	51858253	ENSMUSG00000059182.5_Skap2_Macrophage	0	-
chr6	5802398	5803552	>Mouse-chr6-5751484-5754011---element-1559---negative-	chr6	5802398	5803552	ENSMUSG00000029757.12_Dync1i1_Muscle3	0	+
chr6	94647419	94648621	>Mouse-chr6-94597413-94598988---element-1736---positive----midbrain-(mesencephalon)[8/10]---limb[5/10]---branchial-arch[7/10]---nose[6/10]---facial-mesenchyme[9/10]	chr6	94647399	94648621	ENSMUSG00000030029.10_Lrig1_Perichondrium	0	-
chr6	94755615	94755788	>Mouse-chr6-94703092-94707434---element-878---positive----forebrain[6/7]	chr6	94755615	94755788	ENSMUSG00000030029.10_Lrig1_Perichondrium	0	-
chr6	94755998	94756343	>Mouse-chr6-94703092-94707434---element-878---positive----forebrain[6/7]	chr6	94755998	94756343	ENSMUSG00000030029.10_Lrig1_Perichondrium	0	-
chr7	93060869	93061305	>Mouse-chr7-100209379-100212136---element-1534---positive----neural-tube[5/5]---hindbrain-(rhombencephalon)[4/5]---forebrain[5/5]---limb[4/5]	chr7	93060455	93061305	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr7	93061519	93061875	>Mouse-chr7-100209379-100212136---element-1534---positive----neural-tube[5/5]---hindbrain-(rhombencephalon)[4/5]---forebrain[5/5]---limb[4/5]	chr7	93061519	93061875	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr7	93061889	93061951	>Mouse-chr7-100209379-100212136---element-1534---positive----neural-tube[5/5]---hindbrain-(rhombencephalon)[4/5]---forebrain[5/5]---limb[4/5]	chr7	93061889	93061951	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr7	93061953	93062770	>Mouse-chr7-100209379-100212136---element-1534---positive----neural-tube[5/5]---hindbrain-(rhombencephalon)[4/5]---forebrain[5/5]---limb[4/5]	chr7	93061953	93062770	ENSMUSG00000051515.8_Fam181b_Mesenchyme	0	+
chr7	110162809	110162965	>Mouse-chr7-117306323-117309835---element-725---positive----dorsal-root-ganglion[8/17]---heart[9/17]	chr7	110162781	110162965	ENSMUSG00000101585.2_1600010M07Rik_Macrophage	0	-
chr7	110163098	110163387	>Mouse-chr7-117306323-117309835---element-725---positive----dorsal-root-ganglion[8/17]---heart[9/17]	chr7	110163098	110163387	ENSMUSG00000101585.2_1600010M07Rik_Macrophage	0	-
chr7	110163861	110165336	>Mouse-chr7-117306323-117309835---element-725---positive----dorsal-root-ganglion[8/17]---heart[9/17]	chr7	110163861	110165336	ENSMUSG00000101585.2_1600010M07Rik_Macrophage	0	-
chr7	115596384	115596983	>Mouse-chr7-122739352-122742708---element-897---negative-	chr7	115596384	115596983	ENSMUSG00000051910.9_Sox6_Chondrocyte	0	-
chr7	115597104	115597939	>Mouse-chr7-122739352-122742708---element-897---negative-	chr7	115597104	115597939	ENSMUSG00000051910.9_Sox6_Chondrocyte	0	-
chr7	130060148	130060748	>Mouse-chr7-137203062-137204849---element-608---negative-	chr7	130060148	130060748	ENSMUSG00000030849.13_Fgfr2_Chondrocyte	0	-
chr7	130060763	130060999	>Mouse-chr7-137203062-137204849---element-608---negative-	chr7	130060763	130060999	ENSMUSG00000030849.13_Fgfr2_Chondrocyte	0	-
chr7	19319484	19320266	>Mouse-chr7-19904756-19905615---element-567---positive----heart[3/6]	chr7	19319484	19320607	ENSMUSG00000003545.2_Fosb_Perichondrium	0	-
chr7	66966164	66967468	>Mouse-chr7-74110477-74112961---element-1704---negative-	chr7	66966164	66967468	ENSMUSG00000058145.11_Adamts17_Perichondrium	0	+
chr8	11357852	11358445	>Mouse-chr8-11356668-11359383---element-1362---negative-	chr8	11357852	11358445	ENSMUSG00000031502.9_Col4a1_Muscle2	0	-
chr8	56983059	56983376	>Mouse-chr8-59461837-59463756---element-1689---positive----limb[8/10]	chr8	56983059	56983376	ENSMUSG00000100510.2_AV026068_Mesenchyme	0	-
chr8	56983843	56984359	>Mouse-chr8-59461837-59463756---element-1689---positive----limb[8/10]	chr8	56983843	56984359	ENSMUSG00000100510.2_AV026068_Mesenchyme	0	-
chr8	57010036	57011000	>Mouse-chr8-59488430-59490564---element-1690---negative-	chr8	57010036	57011000	ENSMUSG00000100510.2_AV026068_Mesenchyme	0	-
chr8	57333128	57334891	>Mouse-chr8-59811925-59813688---element-1283---positive----branchial-arch[9/10]	chr8	57319142	57337427	ENSMUSG00000100510.2_AV026068_Mesenchyme	0	-
chr8	57405194	57405790	>Mouse-chr8-59883499-59884663---element-1833---negative-	chr8	57405194	57405790	ENSMUSG00000031610.3_Scrg1_Chondrocyte	0	+
chr9	118980056	118980128	>Mouse-chr9-118888604-118890906---element-1627---positive----limb[5/6]	chr9	118980056	118980128	ENSMUSG00000047409.9_Ctdspl_Chondrocyte	0	+
chr9	118980146	118981055	>Mouse-chr9-118888604-118890906---element-1627---positive----limb[5/6]	chr9	118980146	118981055	ENSMUSG00000047409.9_Ctdspl_Chondrocyte	0	+
chr9	119980656	119982776	>Mouse-chr9-119889709-119891894---element-1667---negative-	chr9	119980656	119984952	ENSMUSG00000032515.7_Csrnp1_EMP	0	-
chr9	23011284	23011916	>Mouse-chr9-22815322-22817199---element-1296---positive----midbrain-(mesencephalon)[3/5]---forebrain[4/5]---limb[3/5]---eye[4/5]	chr9	23011284	23011916	ENSMUSG00000031963.7_Bmper_Chondrocyte	0	+
chr9	23012014	23012573	>Mouse-chr9-22815322-22817199---element-1296---positive----midbrain-(mesencephalon)[3/5]---forebrain[4/5]---limb[3/5]---eye[4/5]	chr9	23012014	23012573	ENSMUSG00000031963.7_Bmper_Chondrocyte	0	+
chr9	23083209	23084710	>Mouse-chr9-22887576-22889154---element-1696---positive----midbrain-(mesencephalon)[6/7]	chr9	23083209	23084812	ENSMUSG00000031963.7_Bmper_Chondrocyte	0	+
chr9	62414946	62415677	>Mouse-chr9-62262456-62263484---element-210---positive----nose[3/4]	chr9	62414946	62415772	ENSMUSG00000041729.11_Coro2b_Muscle2	0	-