chr10	45229738	45230544	>Mouse-chr10-44948419-44951592---element-87---positive----limb[4/7]---heart[7/7]---other[4/7]	chr10	45229738	45230544	ENSMUSG00000019848.10_Popdc3_Muscle3	0	+
chr10	45230567	45230768	>Mouse-chr10-44948419-44951592---element-87---positive----limb[4/7]---heart[7/7]---other[4/7]	chr10	45230567	45230768	ENSMUSG00000019848.10_Popdc3_Muscle3	0	+
chr10	45231096	45231294	>Mouse-chr10-44948419-44951592---element-87---positive----limb[4/7]---heart[7/7]---other[4/7]	chr10	45231096	45231294	ENSMUSG00000019848.10_Popdc3_Muscle3	0	+
chr10	52742536	52743161	>Mouse-chr10-52461618-52464960---element-782---positive----neural-tube[7/9]---hindbrain-(rhombencephalon)[7/9]---midbrain-(mesencephalon)[7/9]---forebrain[7/9]	chr10	52742536	52743161	ENSMUSG00000038602.7_Slc35f1_NeuralCrest	0	+
chr11	112412085	112413115	>Mouse-chr11-112273179-112274981---element-634---positive----limb[9/10]---branchial-arch[5/10]	chr11	112412085	112413115	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112449673	112449973	>Mouse-chr11-112310843-112312735---element-1285---negative-	chr11	112449673	112449973	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112450143	112450761	>Mouse-chr11-112310843-112312735---element-1285---negative-	chr11	112450143	112450761	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112780251	112780786	>Mouse-chr11-112641565-112642353---element-635---positive----branchial-arch[5/13]	chr11	112779167	112780786	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	112780787	112781039	>Mouse-chr11-112641565-112642353---element-635---positive----branchial-arch[5/13]	chr11	112780787	112785588	ENSMUSG00000041674.12_BC006965_Chondrocyte	0	-
chr11	98902563	98903196	>Mouse-chr11-98762967-98767955---element-1323---positive----other[5/7]	chr11	98902563	98903196	ENSMUSG00000017499.11_Cdc6_Muscle1	0	+
chr12	73511347	73512172	>Mouse-chr12-74611486-74614036---element-1595---negative-	chr12	73511347	73512172	ENSMUSG00000034435.5_Tmem30b_Muscle1	0	-
chr13	37310995	37313794	>Mouse-chr13-37402835-37405679---element-979---positive----hindbrain-(rhombencephalon)[9/11]---dorsal-root-ganglion[4/11]---trigeminal-V-(ganglion,-cranial)[3/11]	chr13	37310995	37313794	ENSMUSG00000021423.5_Ly86_Macrophage	0	+
chr13	46571320	46571590	>Mouse-chr13-46666689-46669718---element-132---positive----somite[6/7]---midbrain-(mesencephalon)[6/7]---branchial-arch[5/7]---eye[6/7]---heart[7/7]	chr13	46571022	46571590	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	46571956	46572432	>Mouse-chr13-46666689-46669718---element-132---positive----somite[6/7]---midbrain-(mesencephalon)[6/7]---branchial-arch[5/7]---eye[6/7]---heart[7/7]	chr13	46571956	46572432	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	46633401	46633644	>Mouse-chr13-46727660-46731161---element-813---negative-	chr13	46633401	46633644	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	46633700	46634404	>Mouse-chr13-46727660-46731161---element-813---negative-	chr13	46633700	46634404	ENSMUSG00000021373.11_Cap2_Muscle3	0	+
chr13	51919913	51921539	>Mouse-chr13-52015282-52017501---element-1565---positive----neural-tube[3/6]---hindbrain-(rhombencephalon)[3/6]---midbrain-(mesencephalon)[3/6]---forebrain[3/6]	chr13	51918689	51921539	ENSMUSG00000021453.2_Gadd45g_Muscle3	0	+
chr13	51921555	51921707	>Mouse-chr13-52015282-52017501---element-1565---positive----neural-tube[3/6]---hindbrain-(rhombencephalon)[3/6]---midbrain-(mesencephalon)[3/6]---forebrain[3/6]	chr13	51921555	51921707	ENSMUSG00000021453.2_Gadd45g_Muscle3	0	+
chr13	76810538	76810843	>Mouse-chr13-76949140-76951140---element-1556---positive----hindbrain-(rhombencephalon)[3/5]---forebrain[3/5]	chr13	76810538	76810843	ENSMUSG00000021596.12_Mctp1_EMP	0	+
chr15	13392328	13392660	>Mouse-chr15-13321649-13325391---element-13---positive----hindbrain-(rhombencephalon)[6/7]---forebrain[6/7]---limb[4/7]---nose[4/7]	chr15	13392328	13392660	ENSMUSG00000039385.4_Cdh6_NeuralCrest	0	-
chr15	13392827	13393638	>Mouse-chr15-13321649-13325391---element-13---positive----hindbrain-(rhombencephalon)[6/7]---forebrain[6/7]---limb[4/7]---nose[4/7]	chr15	13392827	13393638	ENSMUSG00000039385.4_Cdh6_NeuralCrest	0	-
chr15	66825281	66825399	>Mouse-chr15-66655863-66658724---element-104---positive----heart[7/7]---melanocytes[5/7]---liver[3/7]	chr15	66825281	66825399	ENSMUSG00000022372.10_Sla_Macrophage	0	-
chr15	66825673	66825808	>Mouse-chr15-66655863-66658724---element-104---positive----heart[7/7]---melanocytes[5/7]---liver[3/7]	chr15	66825673	66825808	ENSMUSG00000022372.10_Sla_Macrophage	0	-
chr15	91017632	91017835	>Mouse-chr15-90846953-90850479---element-1478---positive----neural-tube[3/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]	chr15	91017632	91017835	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr15	91017925	91018097	>Mouse-chr15-90846953-90850479---element-1478---positive----neural-tube[3/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]	chr15	91017925	91018097	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr15	91018585	91018646	>Mouse-chr15-90846953-90850479---element-1478---positive----neural-tube[3/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]	chr15	91018585	91018646	ENSMUSG00000022629.12_Kif21a_NeuralCrest	0	-
chr17	29355610	29357019	>Mouse-chr17-29491795-29494823---element-1479---negative-	chr17	29355610	29357019	ENSMUSG00000024013.10_Fgd2_Macrophage	0	+
chr17	44722492	44722690	>Mouse-chr17-44859063-44860738---element-657---positive----branchial-arch[3/6]	chr17	44722492	44722690	ENSMUSG00000039153.12_Runx2_Chondrocyte	0	-
chr1	74815067	74815253	>Mouse-chr1-74861638-74864881---element-1017---positive----heart[3/9]	chr1	74815067	74815253	ENSMUSG00000026167.10_Wnt10a_Epithelial	0	+
chr1	74816389	74817545	>Mouse-chr1-74861638-74864881---element-1017---positive----heart[3/9]	chr1	74816389	74817545	ENSMUSG00000026167.10_Wnt10a_Epithelial	0	+
chr17	7269179	7269426	>Mouse-chr17-7472842-7474317---element-108---positive----nose[3/4]---heart[4/4]---liver[3/4]	chr17	7269179	7269426	ENSMUSG00000023809.9_Rps6ka2_Muscle3	0	+
chr1	78187095	78188220	>Mouse-chr1-78183670-78184795---element-1094---negative-	chr1	78186834	78194272	ENSMUSG00000004872.11_Pax3_Muscle1	0	-
chr1	84549338	84550654	>Mouse-chr1-84545385-84547922---element-666---negative-	chr1	84549338	84550654	ENSMUSG00000036766.8_Dner_Muscle3	0	-
chr19	32106895	32106961	>Mouse-chr19-32181141-32182808---element-1654---positive----heart[3/7]	chr19	32106895	32106961	ENSMUSG00000024887.9_Asah2_Endothelial	0	-
chr19	32107290	32107396	>Mouse-chr19-32181141-32182808---element-1654---positive----heart[3/7]	chr19	32107290	32107396	ENSMUSG00000024887.9_Asah2_Endothelial	0	-
chr19	32107413	32108318	>Mouse-chr19-32181141-32182808---element-1654---positive----heart[3/7]	chr19	32107413	32108517	ENSMUSG00000024887.9_Asah2_Endothelial	0	-
chr19	47301206	47302242	>Mouse-chr19-47375696-47376732---element-1098---positive----hindbrain-(rhombencephalon)[12/16]---somite[8/16]---midbrain-(mesencephalon)[12/16]	chr19	47301092	47302712	ENSMUSG00000006435.11_Neurl1a_Muscle3	0	+
chr19	58372244	58372300	>Mouse-chr19-58446412-58447552---element-445---positive----limb[5/7]---eye[7/7]---facial-mesenchyme[7/7]	chr19	58372244	58372300	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr19	58372302	58372581	>Mouse-chr19-58446412-58447552---element-445---positive----limb[5/7]---eye[7/7]---facial-mesenchyme[7/7]	chr19	58372302	58372581	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr19	58372659	58373062	>Mouse-chr19-58446412-58447552---element-445---positive----limb[5/7]---eye[7/7]---facial-mesenchyme[7/7]	chr19	58372659	58373165	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr19	58419296	58420158	>Mouse-chr19-58493721-58494961---element-916---positive----other[5/6]	chr19	58419296	58420158	ENSMUSG00000025089.11_Gfra1_Muscle2_3	0	-
chr1	9648564	9648831	>Mouse-chr1-9638304-9641046---element-1546---positive----neural-tube[5/8]---hindbrain-(rhombencephalon)[7/8]---midbrain-(mesencephalon)[6/8]---dorsal-root-ganglion[4/8]---trigeminal-V-(ganglion,-cranial)[6/8]---cranial-nerve[5/8]	chr1	9648564	9648831	ENSMUSG00000079671.4_2610203C22Rik_Endothelial_Macrophage	0	-
chr1	9648871	9649710	>Mouse-chr1-9638304-9641046---element-1546---positive----neural-tube[5/8]---hindbrain-(rhombencephalon)[7/8]---midbrain-(mesencephalon)[6/8]---dorsal-root-ganglion[4/8]---trigeminal-V-(ganglion,-cranial)[6/8]---cranial-nerve[5/8]	chr1	9648871	9649710	ENSMUSG00000079671.4_2610203C22Rik_Endothelial_Macrophage	0	-
chr2	25125903	25126886	>Mouse-chr2-24980365-24983610---element-1454---positive----neural-tube[4/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]---eye[3/4]	chr2	25125903	25126886	ENSMUSG00000087028.3_Gm13387_Endothelial	0	-
chr2	25127187	25127693	>Mouse-chr2-24980365-24983610---element-1454---positive----neural-tube[4/4]---hindbrain-(rhombencephalon)[3/4]---midbrain-(mesencephalon)[3/4]---forebrain[3/4]---eye[3/4]	chr2	25127187	25127693	ENSMUSG00000087028.3_Gm13387_Endothelial	0	-
chr3	121953542	121954312	>Mouse-chr3-121656460-121657309---element-434---negative-	chr3	121952937	121954312	ENSMUSG00000039831.12_Arhgap29_Muscle2_3	0	+
chr3	35102654	35102720	>Mouse-chr3-35001233-35002696---element-639---negative-	chr3	35102654	35102720	ENSMUSG00000074637.6_Sox2_NeuralCrest	0	+
chr3	35103043	35103596	>Mouse-chr3-35001233-35002696---element-639---negative-	chr3	35103043	35103596	ENSMUSG00000074637.6_Sox2_NeuralCrest	0	+
chr4	108361057	108361132	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108361057	108361132	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108361846	108361904	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108361846	108361904	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108362424	108363699	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108362424	108363699	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	108363769	108364432	>Mouse-chr4-108033623-108037133---element-1490---positive----neural-tube[7/7]---hindbrain-(rhombencephalon)[7/7]---somite[5/7]---midbrain-(mesencephalon)[7/7]---limb[7/7]---branchial-arch[6/7]---nose[7/7]---genital-tubercle[7/7]---facial-mesenchyme[7/7]	chr4	108363769	108364432	ENSMUSG00000059816.5_Fam159a_Muscle2	0	-
chr4	135205845	135206824	>Mouse-chr4-134761760-134763122---element-23---negative-	chr4	135205767	135206824	ENSMUSG00000070691.6_Runx3_Chondrocyte	0	+
chr4	148859767	148860688	>Mouse-chr4-148233580-148235065---element-1532---positive----hindbrain-(rhombencephalon)[5/6]---cranial-nerve[3/6]	chr4	148859767	148860688	ENSMUSG00000028977.12_Casz1_Muscle3	0	+
chr4	66894617	66895082	>Mouse-chr4-66555426-66556324---element-279---positive----facial-mesenchyme[8/8]	chr4	66894617	66895082	ENSMUSG00000039005.9_Tlr4_Macrophage	0	+
chr4	66895084	66895290	>Mouse-chr4-66555426-66556324---element-279---positive----facial-mesenchyme[8/8]	chr4	66895084	66895403	ENSMUSG00000039005.9_Tlr4_Macrophage	0	+
chr4	97647762	97648486	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97647762	97648486	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr4	97648819	97649141	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97648819	97649141	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr4	97649150	97649270	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97649150	97649270	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr4	97649278	97649552	>Mouse-chr4-97313903-97317906---element-1308---negative-	chr4	97649278	97649552	ENSMUSG00000048747.10_E130114P18Rik_NeuralCrest	0	-
chr5	64877116	64877769	>Mouse-chr5-65268023-65270020---element-1725---positive----dorsal-root-ganglion[4/10]---trigeminal-V-(ganglion,-cranial)[4/10]---cranial-nerve[4/10]	chr5	64877116	64877769	ENSMUSG00000044827.6_Tlr1_Macrophage	0	-
chr5	64877795	64878781	>Mouse-chr5-65268023-65270020---element-1725---positive----dorsal-root-ganglion[4/10]---trigeminal-V-(ganglion,-cranial)[4/10]---cranial-nerve[4/10]	chr5	64877795	64878862	ENSMUSG00000044827.6_Tlr1_Macrophage	0	-
chr6	51857621	51858253	>Mouse-chr6-51807234-51808613---element-412---positive----neural-tube[4/11]	chr6	51857621	51858253	ENSMUSG00000059182.5_Skap2_Macrophage	0	-
chr6	5802398	5803552	>Mouse-chr6-5751484-5754011---element-1559---negative-	chr6	5802398	5803552	ENSMUSG00000029757.12_Dync1i1_Muscle3	0	+
chr7	115596384	115596983	>Mouse-chr7-122739352-122742708---element-897---negative-	chr7	115596384	115596983	ENSMUSG00000051910.9_Sox6_Chondrocyte	0	-
chr7	115597104	115597939	>Mouse-chr7-122739352-122742708---element-897---negative-	chr7	115597104	115597939	ENSMUSG00000051910.9_Sox6_Chondrocyte	0	-
chr7	130060148	130060748	>Mouse-chr7-137203062-137204849---element-608---negative-	chr7	130060148	130060748	ENSMUSG00000030849.13_Fgfr2_Chondrocyte	0	-
chr7	130060763	130060999	>Mouse-chr7-137203062-137204849---element-608---negative-	chr7	130060763	130060999	ENSMUSG00000030849.13_Fgfr2_Chondrocyte	0	-
chr8	57405194	57405790	>Mouse-chr8-59883499-59884663---element-1833---negative-	chr8	57405194	57405790	ENSMUSG00000031610.3_Scrg1_Chondrocyte	0	+
chr9	119980656	119982776	>Mouse-chr9-119889709-119891894---element-1667---negative-	chr9	119980656	119984952	ENSMUSG00000032515.7_Csrnp1_EMP	0	-
chr9	23011284	23011916	>Mouse-chr9-22815322-22817199---element-1296---positive----midbrain-(mesencephalon)[3/5]---forebrain[4/5]---limb[3/5]---eye[4/5]	chr9	23011284	23011916	ENSMUSG00000031963.7_Bmper_Chondrocyte	0	+
chr9	23012014	23012573	>Mouse-chr9-22815322-22817199---element-1296---positive----midbrain-(mesencephalon)[3/5]---forebrain[4/5]---limb[3/5]---eye[4/5]	chr9	23012014	23012573	ENSMUSG00000031963.7_Bmper_Chondrocyte	0	+
chr9	23083209	23084710	>Mouse-chr9-22887576-22889154---element-1696---positive----midbrain-(mesencephalon)[6/7]	chr9	23083209	23084812	ENSMUSG00000031963.7_Bmper_Chondrocyte	0	+