FastQCFastQC Report
Wed 1 Jul 2015
SRR1930171.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1930171.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32479379
Sequences flagged as poor quality0
Sequence length200
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATC1837250.042.532173195
CCGTAT2442000.031.124937195
GTATCA2097800.026.899658195
TATGCG171600.023.64599695-99
CCGTCG211250.023.26178695-99
CGCCGT2721000.022.498278190-194
TCGCCG3015850.021.115969190-194
TGCCGT2952700.021.0845190-94
GCCGTC2739500.020.87550790-94
ATGCCG3275150.019.77489590-94
CCGTCT2506050.019.07839690-94
GCCGTA2962400.019.04829190-194
GTCGCC3432050.018.396177190-194
CGTCTT2204500.017.2390390-94
CGGTGG4883000.016.847486195
TCGGTG5113250.016.515947195
GCCGTG356150.015.75863395-99
GGTCGC3645800.015.667054190-194
TATGCC4235750.015.23732890-94
CGTCGA67000.015.16961495-99
Produced by FastQC (version 0.11.3)