1 # name of anaylsis directory and stem for associated files
4 # if APPEND vars true, a _wXX and/or _tYY added to analysis name
5 # where XX = WINDOW and YY = THRESHOLD
6 # Highly recommeded with use of command line override of WINDOW or THRESHOLD
10 # how many sequences are being analyzed
14 SEQUENCE seq/mouse_mck_pro.fa
15 ANNOTATION mm_mck3test.annot
18 # the second sequence info
19 SEQUENCE seq/human_mck_pro.fa
20 # ANNOTATION hs_mck3test.annot
25 SEQUENCE seq/rabbit_mck_pro.fa
26 # ANNOTATION ra_mck3test.annot
28 # analyses parameters: command line args -w -t will override these