1 # -*- coding: utf-8 -*-
2 from south.utils import datetime_utils as datetime
3 from south.db import db
4 from south.v2 import SchemaMigration
5 from django.db import models
8 class Migration(SchemaMigration):
10 def forwards(self, orm):
12 # Changing field 'FileType.regex'
13 db.alter_column(u'experiments_filetype', 'regex', self.gf('django.db.models.fields.TextField')(null=True))
15 def backwards(self, orm):
17 # Changing field 'FileType.regex'
18 db.alter_column(u'experiments_filetype', 'regex', self.gf('django.db.models.fields.CharField')(max_length=50, null=True))
22 'Meta': {'object_name': 'Group'},
23 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
24 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '80'}),
25 'permissions': ('django.db.models.fields.related.ManyToManyField', [], {'to': u"orm['auth.Permission']", 'symmetrical': 'False', 'blank': 'True'})
28 'Meta': {'ordering': "(u'content_type__app_label', u'content_type__model', u'codename')", 'unique_together': "((u'content_type', u'codename'),)", 'object_name': 'Permission'},
29 'codename': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
30 'content_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['contenttypes.ContentType']"}),
31 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
32 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
35 'Meta': {'object_name': 'User'},
36 'date_joined': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
37 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'blank': 'True'}),
38 'first_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
39 'groups': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Group']"}),
40 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
41 'is_active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
42 'is_staff': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
43 'is_superuser': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
44 'last_login': ('django.db.models.fields.DateTimeField', [], {'default': 'datetime.datetime.now'}),
45 'last_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'blank': 'True'}),
46 'password': ('django.db.models.fields.CharField', [], {'max_length': '128'}),
47 'user_permissions': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "u'user_set'", 'blank': 'True', 'to': u"orm['auth.Permission']"}),
48 'username': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '30'})
50 u'contenttypes.contenttype': {
51 'Meta': {'ordering': "('name',)", 'unique_together': "(('app_label', 'model'),)", 'object_name': 'ContentType', 'db_table': "'django_content_type'"},
52 'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
53 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
54 'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
55 'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})
57 u'experiments.clusterstation': {
58 'Meta': {'ordering': "['-isdefault', 'name']", 'object_name': 'ClusterStation'},
59 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
60 'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
61 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
63 u'experiments.datafile': {
64 'Meta': {'object_name': 'DataFile'},
65 'data_run': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.DataRun']"}),
66 'file_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FileType']"}),
67 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
68 'library': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Library']", 'null': 'True', 'blank': 'True'}),
69 'random_key': ('django.db.models.fields.CharField', [], {'default': "'8e0f4e4c-83be-11e3-bace-f0def16fbea3'", 'max_length': '64', 'db_index': 'True'}),
70 'relative_pathname': ('django.db.models.fields.CharField', [], {'max_length': '255', 'db_index': 'True'})
72 u'experiments.datarun': {
73 'Meta': {'object_name': 'DataRun'},
74 'alignment_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
75 'alignment_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
76 'basecall_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
77 'basecall_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
78 'comment': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
79 'cycle_start': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
80 'cycle_stop': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
81 'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
82 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
83 'image_software': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
84 'image_version': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
85 'last_update_time': ('django.db.models.fields.DateTimeField', [], {}),
86 'result_dir': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
87 'run_start_time': ('django.db.models.fields.DateTimeField', [], {}),
88 'run_status': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
89 'runfolder_name': ('django.db.models.fields.CharField', [], {'max_length': '50'})
91 u'experiments.filetype': {
92 'Meta': {'object_name': 'FileType'},
93 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
94 'mimetype': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
95 'name': ('django.db.models.fields.CharField', [], {'max_length': '50'}),
96 'regex': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'})
98 u'experiments.flowcell': {
99 'Meta': {'ordering': "['-run_date']", 'object_name': 'FlowCell'},
100 'advanced_run': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
101 'cluster_station': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.ClusterStation']"}),
102 'control_lane': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
103 'flowcell_id': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '20', 'db_index': 'True'}),
104 'flowcell_model': ('django.db.models.fields.related.ForeignKey', [], {'default': 'None', 'to': u"orm['experiments.FlowCellModel']"}),
105 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
106 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
107 'paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
108 'read_length': ('django.db.models.fields.IntegerField', [], {'default': '32'}),
109 'run_date': ('django.db.models.fields.DateTimeField', [], {}),
110 'sequencer': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.Sequencer']"})
112 u'experiments.flowcellmodel': {
113 'Meta': {'object_name': 'FlowCellModel'},
114 'fixed_time': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
115 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
116 'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
117 'name': ('django.db.models.fields.TextField', [], {}),
118 'per_cycle_time': ('django.db.models.fields.IntegerField', [], {'default': '0'})
120 u'experiments.lane': {
121 'Meta': {'object_name': 'Lane'},
122 'cluster_estimate': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
123 'comment': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
124 'flowcell': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['experiments.FlowCell']"}),
125 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
126 'lane_number': ('django.db.models.fields.IntegerField', [], {}),
127 'library': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Library']"}),
128 'pM': ('django.db.models.fields.DecimalField', [], {'default': '5', 'max_digits': '5', 'decimal_places': '2'}),
129 'status': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'})
131 u'experiments.sequencer': {
132 'Meta': {'ordering': "['-isdefault', '-active', 'name']", 'object_name': 'Sequencer'},
133 'active': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
134 'comment': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
135 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
136 'instrument_name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
137 'isdefault': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
138 'model': ('django.db.models.fields.CharField', [], {'max_length': '255'}),
139 'name': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'}),
140 'serial_number': ('django.db.models.fields.CharField', [], {'max_length': '50', 'db_index': 'True'})
142 u'samples.affiliation': {
143 'Meta': {'ordering': "['name', 'contact']", 'unique_together': "(('name', 'contact'),)", 'object_name': 'Affiliation'},
144 'contact': ('django.db.models.fields.CharField', [], {'max_length': '256', 'null': 'True', 'blank': 'True'}),
145 'email': ('django.db.models.fields.EmailField', [], {'max_length': '75', 'null': 'True', 'blank': 'True'}),
146 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
147 'name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'}),
148 'users': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'to': u"orm['samples.HTSUser']", 'null': 'True', 'blank': 'True'})
150 u'samples.antibody': {
151 'Meta': {'ordering': "['antigene']", 'object_name': 'Antibody'},
152 'antibodies': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
153 'antigene': ('django.db.models.fields.CharField', [], {'max_length': '500', 'db_index': 'True'}),
154 'biology': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
155 'catalog': ('django.db.models.fields.CharField', [], {'max_length': '50', 'null': 'True', 'blank': 'True'}),
156 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
157 'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
158 'notes': ('django.db.models.fields.TextField', [], {'null': 'True', 'blank': 'True'}),
159 'source': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '500', 'null': 'True', 'blank': 'True'})
161 u'samples.cellline': {
162 'Meta': {'ordering': "['cellline_name']", 'object_name': 'Cellline'},
163 'cellline_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100', 'db_index': 'True'}),
164 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
165 'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
166 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
168 u'samples.condition': {
169 'Meta': {'ordering': "['condition_name']", 'object_name': 'Condition'},
170 'condition_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '2000', 'db_index': 'True'}),
171 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
172 'nickname': ('django.db.models.fields.CharField', [], {'db_index': 'True', 'max_length': '20', 'null': 'True', 'blank': 'True'}),
173 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'})
175 u'samples.experimenttype': {
176 'Meta': {'object_name': 'ExperimentType'},
177 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
178 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '50'})
180 u'samples.htsuser': {
181 'Meta': {'ordering': "['first_name', 'last_name', 'username']", 'object_name': 'HTSUser', '_ormbases': [u'auth.User']},
182 u'user_ptr': ('django.db.models.fields.related.OneToOneField', [], {'to': u"orm['auth.User']", 'unique': 'True', 'primary_key': 'True'})
184 u'samples.library': {
185 'Meta': {'ordering': "['-id']", 'object_name': 'Library'},
186 'account_number': ('django.db.models.fields.CharField', [], {'max_length': '100', 'null': 'True', 'blank': 'True'}),
187 'affiliations': ('django.db.models.fields.related.ManyToManyField', [], {'symmetrical': 'False', 'related_name': "'library_affiliations'", 'null': 'True', 'to': u"orm['samples.Affiliation']"}),
188 'amplified_from_sample': ('django.db.models.fields.related.ForeignKey', [], {'blank': 'True', 'related_name': "'amplified_into_sample'", 'null': 'True', 'to': u"orm['samples.Library']"}),
189 'antibody': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Antibody']", 'null': 'True', 'blank': 'True'}),
190 'bioanalyzer_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'}),
191 'bioanalyzer_image_url': ('django.db.models.fields.URLField', [], {'default': "''", 'max_length': '200', 'blank': 'True'}),
192 'bioanalyzer_summary': ('django.db.models.fields.TextField', [], {'default': "''", 'blank': 'True'}),
193 'cell_line': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Cellline']", 'null': 'True', 'blank': 'True'}),
194 'condition': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Condition']", 'null': 'True', 'blank': 'True'}),
195 'creation_date': ('django.db.models.fields.DateField', [], {'null': 'True', 'blank': 'True'}),
196 'experiment_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.ExperimentType']"}),
197 'gel_cut_size': ('django.db.models.fields.IntegerField', [], {'default': '225', 'null': 'True', 'blank': 'True'}),
198 'hidden': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
199 'id': ('django.db.models.fields.CharField', [], {'max_length': '10', 'primary_key': 'True'}),
200 'insert_size': ('django.db.models.fields.IntegerField', [], {'null': 'True', 'blank': 'True'}),
201 'library_name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '100'}),
202 'library_species': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.Species']"}),
203 'library_type': ('django.db.models.fields.related.ForeignKey', [], {'to': u"orm['samples.LibraryType']", 'null': 'True', 'blank': 'True'}),
204 'made_by': ('django.db.models.fields.CharField', [], {'default': "'Lorian'", 'max_length': '50', 'blank': 'True'}),
205 'made_for': ('django.db.models.fields.CharField', [], {'max_length': '50', 'blank': 'True'}),
206 'multiplex_id': ('django.db.models.fields.CharField', [], {'max_length': '128', 'null': 'True', 'blank': 'True'}),
207 'notes': ('django.db.models.fields.TextField', [], {'blank': 'True'}),
208 'replicate': ('django.db.models.fields.PositiveSmallIntegerField', [], {'null': 'True', 'blank': 'True'}),
209 'stopping_point': ('django.db.models.fields.CharField', [], {'default': "'Done'", 'max_length': '25'}),
210 'successful_pM': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '9', 'decimal_places': '1', 'blank': 'True'}),
211 'tags': ('django.db.models.fields.related.ManyToManyField', [], {'blank': 'True', 'related_name': "'library_tags'", 'null': 'True', 'symmetrical': 'False', 'to': u"orm['samples.Tag']"}),
212 'ten_nM_dilution': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),
213 'undiluted_concentration': ('django.db.models.fields.DecimalField', [], {'null': 'True', 'max_digits': '5', 'decimal_places': '2', 'blank': 'True'})
215 u'samples.librarytype': {
216 'Meta': {'ordering': "['-id']", 'object_name': 'LibraryType'},
217 'can_multiplex': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
218 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
219 'is_paired_end': ('django.db.models.fields.BooleanField', [], {'default': 'True'}),
220 'name': ('django.db.models.fields.CharField', [], {'unique': 'True', 'max_length': '255'})
222 u'samples.species': {
223 'Meta': {'ordering': "['scientific_name']", 'object_name': 'Species'},
224 'common_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'blank': 'True'}),
225 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
226 'scientific_name': ('django.db.models.fields.CharField', [], {'max_length': '256', 'db_index': 'True'})
229 'Meta': {'ordering': "['context', 'tag_name']", 'object_name': 'Tag'},
230 'context': ('django.db.models.fields.CharField', [], {'default': "'Library'", 'max_length': '50'}),
231 u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
232 'tag_name': ('django.db.models.fields.CharField', [], {'max_length': '100', 'db_index': 'True'})
236 complete_apps = ['experiments']