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make mupa file loading eol-style insensitive
[mussa.git]
/
alg
/
CMakeLists.txt
diff --git
a/alg/CMakeLists.txt
b/alg/CMakeLists.txt
index 4ad67da51cf4c31fb11c165e5c946a579dc2bf02..9963d64542b3f4a549e3a1d6a249e6ef5a3a2d11 100644
(file)
--- a/
alg/CMakeLists.txt
+++ b/
alg/CMakeLists.txt
@@
-1,24
+1,54
@@
-SET(SOURCES annotation_colors.cpp
+FIND_PACKAGE(OpenGL )
+FIND_PACKAGE(Boost REQUIRED)
+FIND_PACKAGE(Qt4)
+INCLUDE( ${QT_USE_FILE} )
+INCLUDE( Platform )
+
+SET(MOC_HEADERS
+ mussa.hpp
+ nway_paths.hpp
+ )
+QT4_WRAP_CPP(MOC_SOURCES ${MOC_HEADERS})
+
+SET(SOURCES alphabet.cpp
+ annotations.cpp
+ annotation_colors.cpp
color.cpp
conserved_path.cpp
flp.cpp
flp_seqcomp.cpp
glseqbrowser.cpp
glsequence.cpp
color.cpp
conserved_path.cpp
flp.cpp
flp_seqcomp.cpp
glseqbrowser.cpp
glsequence.cpp
+ io.cpp
mussa.cpp
mussa.cpp
+ motif_parser.cpp
nway_entropy.cpp
nway_other.cpp
nway_paths.cpp
parse_options.cpp
nway_entropy.cpp
nway_other.cpp
nway_paths.cpp
parse_options.cpp
- sequence.cpp)
+ seq.cpp
+ seq_span.cpp
+ sequence.cpp
+ sequence_location.cpp )
-FIND_PACKAGE(OpenGL)
-INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR})
-TARGET_LINK_LIBRARIES(mussa_core ${OPEN_gl_LIBRARY})
+GET_MUSSA_COMPILE_FLAGS(ALG_CFLAGS)
+GET_MUSSA_LINK_FLAGS(ALG_LDFLAGS)
+SET_SOURCE_FILES_PROPERTIES(
+ ${SOURCES} ${MOC_SOURCES}
+ PROPERTIES
+ COMPILE_FLAGS "${ALG_CFLAGS}"
+)
-# these are really only needed for gcc on AMD64
-SET_SOURCE_FILES_PROPERTIES(${SOURCES} PROPERTIES COMPILE_FLAGS "-fPIC")
-SET_TARGET_PROPERTIES(mussa_core PROPERTIES COMPILE_FLAGS "-fPIC")
+ADD_LIBRARY( mussa_core STATIC ${SOURCES} ${MOC_SOURCES})
+INCLUDE_DIRECTORIES(${OPENGL_INCLUDE_DIR}
+ ${BOOST_INCLUDE_DIR}
+ ${QT_INCLUDES}
+ ${CMAKE_CURRENT_SOURCE_DIR})
-ADD_LIBRARY( mussa_core STATIC ${SOURCES} )
+SET_TARGET_PROPERTIES(
+ mussa_core PROPERTIES
+ COMPILE_FLAGS "${ALG_CFLAGS}"
+ LINK_FLAGS "${ALG_LDFLAGS}"
+)
ADD_SUBDIRECTORY( test )
ADD_SUBDIRECTORY( test )
+ADD_SUBDIRECTORY( tsf )