View sequence alignment at non default thresholds

[mussa.git] / alg / nway_paths.hpp

diff --git a/alg/nway_paths.hpp b/alg/nway_paths.hpp
index ccf7ea008a91ac8f036c12615f2e3f2409a5c6f8..1a2b002abd741a5009ae28a5f7319c6bbbd61c4a 100644 (file)
--- a/alg/nway_paths.hpp
+++ b/alg/nway_paths.hpp
@@ -73,10 +73,12 @@ class NwayPaths
     std::list<ConservedPath>::iterator pend() { return pathz.end() ; }
     std::list<ConservedPath>::const_iterator pbegin() const { return pathz.begin() ; }
     std::list<ConservedPath>::const_iterator pend() const { return pathz.end() ; }
+    size_t path_size() const { return refined_pathz.size(); }
     std::list<ExtendedConservedPath>::iterator rpbegin() { return refined_pathz.begin() ; }
     std::list<ExtendedConservedPath>::const_iterator rpend() const { return refined_pathz.end() ; }
     std::list<ExtendedConservedPath>::const_iterator rpbegin() const { return refined_pathz.begin() ; }
     std::list<ExtendedConservedPath>::iterator rpend() { return refined_pathz.end() ; }
+    size_t refined_path_size() const { return refined_pathz.size(); }
     // these probably shouldn't be public, but lets start 
     // simple
     std::list<ConservedPath> pathz;