Initial port to python3

[htsworkflow.git] / htsworkflow / pipelines / test / test_genome_mapper.py

diff --git a/htsworkflow/pipelines/test/test_genome_mapper.py b/htsworkflow/pipelines/test/test_genome_mapper.py
index 8ba1ba5ff4daec281d15ac92fdf389c3c16495ab..e7561adf567b124ea6b06702934335d60337752f 100644 (file)
--- a/htsworkflow/pipelines/test/test_genome_mapper.py
+++ b/htsworkflow/pipelines/test/test_genome_mapper.py
@@ -1,9 +1,9 @@
-import unittest
+from unittest import TestCase
 
-from StringIO import StringIO
+from io import StringIO
 from htsworkflow.pipelines import genome_mapper
 
-class testGenomeMapper(unittest.TestCase):
+class testGenomeMapper(TestCase):
     def test_construct_mapper(self):
         genomes = {
         'Arabidopsis thaliana': {'v01212004': '/arabidopsis'},
@@ -21,13 +21,18 @@ class testGenomeMapper(unittest.TestCase):
         self.failUnlessEqual("%(Mus musculus|mm8)s" % (genome_map), "/mm8")
         self.failUnlessEqual("%(Mus musculus|mm10)s" % (genome_map), "/mm10")
         
-        self.failUnlessEqual(len(genome_map.keys()), 6)
-        self.failUnlessEqual(len(genome_map.values()), 6)
-        self.failUnlessEqual(len(genome_map.items()), 6)
+        self.failUnlessEqual(len(list(genome_map.keys())), 6)
+        self.failUnlessEqual(len(list(genome_map.values())), 6)
+        self.failUnlessEqual(len(list(genome_map.items())), 6)
         
         
 def suite():
-    return unittest.makeSuite(testGenomeMapper,'test')
+    from unittest import TestSuite, defaultTestLoader
+    suite = TestSuite()
+    suite.addTests(defaultTestLoader.loadTestsFromTestCase(testGenomeMapper))
+    return suite
+
 
 if __name__ == "__main__":
-    unittest.main(defaultTest="suite")
+    from unittest import main
+    main(defaultTest="suite")