woldlab.caltech.edu Git - htsworkflow.git/search

2014-10-23	Diane Trout	import os, so we can use os.path.join	commit \| commitdiff \| tree
2014-09-24	Diane Trout	relax requirements to make it easier to install on...	commit \| commitdiff \| tree
2014-09-12	Diane Trout	make it easier to override variables in ENCODED class	commit \| commitdiff \| tree
2014-07-28	Diane Trout	add frozen package list	commit \| commitdiff \| tree
2014-07-26	Diane Trout	configure a mock keyring	commit \| commitdiff \| tree
2014-07-25	Diane Trout	make whitespace pep8 complient	commit \| commitdiff \| tree
2014-07-25	Diane Trout	Use two-scoop style multiple settings file.	commit \| commitdiff \| tree
2014-07-24	Diane Trout	DCC example code sets both content-type and accept...	commit \| commitdiff \| tree
2014-07-24	Diane Trout	pep8 whitespace cleanup.	commit \| commitdiff \| tree
2014-07-24	Diane Trout	create exception using modern python syntax	commit \| commitdiff \| tree
2014-07-24	Diane Trout	remove a commented out import	commit \| commitdiff \| tree
2014-07-24	Diane Trout	Flatten project hierarchy, moving djano applications...	commit \| commitdiff \| tree
2014-06-23	Diane Trout	whitespace cleanup	commit \| commitdiff \| tree
2014-06-23	Diane Trout	clean up for pep8 compliance.	commit \| commitdiff \| tree
2014-06-23	Diane Trout	code cleanup, remove commented out code and adjust...	commit \| commitdiff \| tree
2014-06-23	Diane Trout	Attempt to split common initial data from wold lab...	commit \| commitdiff \| tree
2014-06-23	Diane Trout	Remove very old misplaced initial data fixtures	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Add fields list to a few ModelForms Meta class.	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Rename get_query_set to get_queryset	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Rename HttpResponse parameter mimetype to content_type	commit \| commitdiff \| tree
2014-06-19	Diane Trout	remove file created by typoing file name	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Change unittest2 back into unittest.	commit \| commitdiff \| tree
2014-06-19	Diane Trout	Explicitly list initial_data.json for the test data...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Add post_json as some DCC objects are created with...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Rename headers to json_headers for requests (seemed...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Updates to jsonld context for the DCC schemas.	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Update test_encoded test cases due to https now being...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	DCC switched to https	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Update fastqname code & test code to better support...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Directly generate compressed fastq files from HiSeq...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	the filename templates were moved from condorfastq...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Indicate when desplit_fastq didn't get any files to...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Make sure we can load a run file that lacks alignment...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	For some reason the previous integrety fixes, added...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Postgresql has referential integrety checking.	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Ignore the path when comparing filenames from the md5...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	use autoopen to access fastq files	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Start implementing tool to compute library fastq quality	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Just use the python 2 url parsers instead of trying...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Update timestamps in inventory app test data to be...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	point default flowcell directory to test data	commit \| commitdiff \| tree
2014-06-10	Diane Trout	add default values for some application specific values	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Configure default STATICFILES_DIRS for static files...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Mathematica had a suggestion for a fastq mime type...	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Regex pattern was wrong.	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Convert more timestamps to include timezone	commit \| commitdiff \| tree
2014-06-10	Diane Trout	Merge branch 'master' of mus.cacr.caltech.edu:htsworkflow	commit \| commitdiff \| tree
2014-02-12	Diane Trout	Allow arbitrarily long regexes in experiment.FileType...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Remove django test environment setup code.	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Use SkipIf to skip copier tests if benderjab isn't...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Convert timestamps from the runfolder file to a timezone...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	django provides django.utils.timezone.now to return...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Set default timezone to where our lab is located	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Update test data dates to have timezone information	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Fix test to use newer django database dictionary instead...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Re-add default email addresses for email notification...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Implement a encoded search to json-ld wrapper.	commit \| commitdiff \| tree
2014-01-17	Diane Trout	make sure @vocab url has a trailing #. Its needed to...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Use new context creation functions to attach context...	commit \| commitdiff \| tree
2014-01-17	Diane Trout	Add functions to create a json-ld context and add namespaces...	commit \| commitdiff \| tree
2014-01-15	Diane Trout	Utility class for accessing ENCODE3's submit / data...	commit \| commitdiff \| tree
2014-01-15	Diane Trout	Adapter to use PyLD's json-ld parser to add triples...	commit \| commitdiff \| tree
2014-01-15	Diane Trout	remove some trailing whitespace	commit \| commitdiff \| tree
2014-01-15	Diane Trout	remove some trailing whitespace	commit \| commitdiff \| tree
2014-01-15	Diane Trout	Add option to get_model to disable RDF graph context.	commit \| commitdiff \| tree
2014-01-08	Diane Trout	Ignore kdevelop & kate project files.	commit \| commitdiff \| tree
2014-01-08	Diane Trout	Rename stripNamespace strip_namespace	commit \| commitdiff \| tree
2013-12-17	Diane Trout	remove some test code debugging print statements	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Inventory works, even though its was hidden between...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	move an example result directory into git and use it...	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Merge branch 'django1.4'	commit \| commitdiff \| tree
2013-12-17	Diane Trout	Update requirements to require diango 1.6	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Update manage script to django 1.6	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Being able to filter on paired end runs might be useful	commit \| commitdiff \| tree
2013-12-10	Diane Trout	remove deprecated module django.contrib.databrowse	commit \| commitdiff \| tree
2013-12-10	Diane Trout	With 1.6 boolean field changed to default Null, so...	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Django 1.6 is pickier about enforcing referential integrity	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Fix urls patterns import to be compatible with django 1.6	commit \| commitdiff \| tree
2013-12-10	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	Attempt to be robust to not having an alignment in...	commit \| commitdiff \| tree
2013-12-06	Diane Trout	After implementing proper tests get a working implementation...	commit \| commitdiff \| tree
2013-12-05	Diane Trout	fix typo	commit \| commitdiff \| tree
2013-12-05	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-10-21	Diane Trout	Merge remote-tracking branch 'brisby/django1.4' into...	commit \| commitdiff \| tree
2013-10-21	Diane Trout	Merge branch 'django1.4' of mus.cacr.caltech.edu:htsworkflow...	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Merge branch 'master' into django1.4	commit \| commitdiff \| tree
2013-10-17	Diane Trout	Implement a wrapper around bigWigInfo to report bigWig...	commit \| commitdiff \| tree
2013-09-24	Diane Trout	Share more code to generate result tree.	commit \| commitdiff \| tree
2013-08-12	Diane Trout	Update test data for renamed library type.	commit \| commitdiff \| tree
2013-08-10	Diane Trout	Add sortOrder and filtering parameters to the trackhub.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Move version finding code into the util directory.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Test changes to submission code.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Generate manifest.txt files for submitting to ENCODE3.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	turtle writing improvements.	commit \| commitdiff \| tree
2013-07-22	Diane Trout	Add a generator that returns analysis nodes from a...	commit \| commitdiff \| tree
2013-07-20	Diane Trout	Add python namespace for encode3 RDF namespace	commit \| commitdiff \| tree
2013-07-18	Diane Trout	Add function to list the names for submissions from...	commit \| commitdiff \| tree
2013-07-17	Diane Trout	Add function to parse scp / ssh style URLs.	commit \| commitdiff \| tree
2013-07-16	Diane Trout	Deleting commented out code.	commit \| commitdiff \| tree
2013-07-08	Diane Trout	Update test to work with species -> species_name rename.	commit \| commitdiff \| tree
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