4 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
6 Uploaders: Steffen Moeller <moeller@debian.org>,
7 Yask Gupta <yask.gupta87@gmail.com>,
8 Andreas Tille <tille@debian.org>
9 Build-Depends: debhelper (>= 9), help2man
10 Standards-Version: 3.9.3
11 Homepage: http://bowtie-bio.sourceforge.net/
12 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/bowtie/trunk
13 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bowtie/trunk/
17 Depends: ${shlibs:Depends}, ${misc:Depends}
18 Suggests: bowtie-examples
19 Description: ultrafast memory-efficient short read aligner
20 This package addresses the problem to interpret the results from the
21 latest (2010) DNA sequencing technologies. Those will yield fairly
22 short stretches and those cannot be interpreted directly. It is the
23 challenge for tools like Bowtie to give a chromosomal location to the
24 short stretches of DNA sequenced per run.
26 Bowtie aligns short DNA sequences (reads) to the human genome at a rate
27 of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
28 a Burrows-Wheeler index to keep its memory footprint small: typically
29 about 2.2 GB for the human genome (2.9 GB for paired-end).
31 Package: bowtie-examples
33 Depends: ${misc:Depends}
36 Description: Examples for bowtie, the ultrafast memory-efficient short read aligner
37 This package addresses the problem to interpret the results from the
38 latest (2010) DNA sequencing technologies. Those will yield fairly
39 short stretches and those cannot be interpreted directly. It is the
40 challenge for tools like Bowtie to give a chromosomal location to the
41 short stretches of DNA sequenced per run.
43 Bowtie aligns short DNA sequences (reads) to the human genome at a rate
44 of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
45 a Burrows-Wheeler index to keep its memory footprint small: typically
46 about 2.2 GB for the human genome (2.9 GB for paired-end).
48 This package provides some example data to work with bowtie.