1 Note: This patch is deactivated because the Debian packaged version of SeqAn 1.2
2 is not compatible with the version included into this package
4 Author: Andreas Tille <tilleqdebian.org>
6 Description: Use Debian packages SeqAn Librariy instead of copy in upstream source
7 --- bowtie-0.12.7.orig/Makefile
8 +++ bowtie-0.12.7/Makefile
10 # Makefile for bowtie, bowtie-build, bowtie-inspect
13 -SEQAN_DIR = SeqAn-1.1
14 +SEQAN_DIR = /usr/include/seqan
15 SEQAN_INC = -I $(SEQAN_DIR)
17 GCC_PREFIX = $(shell dirname `which gcc`)
22 - $(shell $(FIND) SeqAn-1.1 -name "*.h") \
23 - $(shell $(FIND) SeqAn-1.1 -name "*.txt") \
24 doc/strip_markdown.pl \