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Release version for Erange 4.0a
[erange.git]
/
MakeBamFromRds.py
diff --git
a/MakeBamFromRds.py
b/MakeBamFromRds.py
index bfb48fde3fc0bebc9bdceaa1dc16f83dd566da59..730c20be6fb147f84e58b7f80485199e0975ad3a 100644
(file)
--- a/
MakeBamFromRds.py
+++ b/
MakeBamFromRds.py
@@
-22,13
+22,13
@@
import pysam
import ReadDataset
from commoncode import getConfigParser, getConfigOption, getConfigBoolOption, getConfigIntOption
import ReadDataset
from commoncode import getConfigParser, getConfigOption, getConfigBoolOption, getConfigIntOption
+VERSION = "1.0"
def main(argv=None):
if not argv:
argv = sys.argv
def main(argv=None):
if not argv:
argv = sys.argv
- verstring = "makeBamFromRds: version 1.0"
- print verstring
+ print "makeBamFromRds: version %s" % VERSION
doPairs = False
doPairs = False
@@
-134,7
+134,7
@@
def makeBamFromRds(rdsfile, outfilename, withUniqs=True, withMulti=True,
for chrom in chromRemoveList:
chromList.remove(chrom)
for chrom in chromRemoveList:
chromList.remove(chrom)
- header = {"HD": {"VN":
"1.0"
}}
+ header = {"HD": {"VN":
VERSION
}}
if referenceSequenceList:
header["SQ"] = referenceSequenceList
if referenceSequenceList:
header["SQ"] = referenceSequenceList