projects
/
erange.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
ReadDataset.py - bug fix in parsing mismatches
[erange.git]
/
ReadDataset.py
diff --git
a/ReadDataset.py
b/ReadDataset.py
index 71544ca2420d2489fca13452976d930a6c55a9c5..4b51471184777a1cfe0d650a51ead592873ce3a1 100644
(file)
--- a/
ReadDataset.py
+++ b/
ReadDataset.py
@@
-833,8
+833,8
@@
class ReadDataset():
change_base = mismatch[change_len-1]
change_pos = int(mismatch[1:change_len-1])
elif sense == "-":
change_base = mismatch[change_len-1]
change_pos = int(mismatch[1:change_len-1])
elif sense == "-":
- change_from = getReverseComplement(
[mismatch[0]
])
- change_base = getReverseComplement(
[mismatch[change_len-1]
])
+ change_from = getReverseComplement(
mismatch[0
])
+ change_base = getReverseComplement(
mismatch[change_len-1
])
change_pos = readlen - int(mismatch[1:change_len-1]) + 1
firsthalf = int(lefthalf)-int(startpos)+1
change_pos = readlen - int(mismatch[1:change_len-1]) + 1
firsthalf = int(lefthalf)-int(startpos)+1
@@
-866,8
+866,8
@@
class ReadDataset():
change_base = mismatch[change_len-1]
change_pos = int(mismatch[1:change_len-1])
elif sense == "-":
change_base = mismatch[change_len-1]
change_pos = int(mismatch[1:change_len-1])
elif sense == "-":
- change_from = getReverseComplement(
[mismatch[0]
])
- change_base = getReverseComplement(
[mismatch[change_len-1]
])
+ change_from = getReverseComplement(
mismatch[0
])
+ change_base = getReverseComplement(
mismatch[change_len-1
])
change_pos = readlen - int(mismatch[1:change_len-1]) + 1
change_at = start + change_pos - 1
change_pos = readlen - int(mismatch[1:change_len-1]) + 1
change_at = start + change_pos - 1