development checkpoint

[erange.git] / ReadDataset.py

diff --git a/ReadDataset.py b/ReadDataset.py
index 56e28a8995b734735ace06d1d990ac9b46753580..850a5ec602a7b6d7a9a22ac98c4bf3eef4b873e5 100644 (file)
--- a/ReadDataset.py
+++ b/ReadDataset.py
@@ -764,6 +764,7 @@ class ReadDataset():
     def getSplicesCount(self, chrom="", rmin="", rmax="", restrict="", distinct=False):
         """ returns the number of row in the splices table.
         """
+        # TODO: if the rds type is DNA should this just return zero?
         return self.getTableEntryCount("splices", chrom, rmin, rmax, restrict, distinct, startField="startL")
 
 
@@ -1221,5 +1222,5 @@ class ReadDataset():
             destinationEntries.append((row["readID"], row["chrom"], int(row["startL"]), int(row["stopL"]), int(row["startR"]), int(row["stopR"]), row["sense"],
                                        row["weight"], row["flag"], row["mismatch"]))
 
-        self.memcon.executemany("insert into splices(ID, readID, chrom, startL, stopL, startR, stopR, sense, weight, flag, mismatch) values (NULL,?,?,?,?,?,?,?,?)", destinationEntries)
+        self.memcon.executemany("insert into splices(ID, readID, chrom, startL, stopL, startR, stopR, sense, weight, flag, mismatch) values (NULL,?,?,?,?,?,?,?,?,?,?)", destinationEntries)