+def makeParser(usage=""):
+ parser = optparse.OptionParser(usage=usage)
+ parser.add_option("--cache", type="int", dest="numCachePages",
+ help="number of cache pages to use [default: 100000]")
+
+ configParser = getConfigParser()
+ section = "altSpliceCounts"
+ numCachePages = getConfigOption(configParser, section, "numCachePages", None)
+
+ parser.set_defaults(numCachePages=numCachePages)
+
+ return parser
+
+