first pass cleanup of cistematic/genomes; change bamPreprocessing

[erange.git] / cdfdist.py

diff --git a/cdfdist.py b/cdfdist.py
index 71662442afff0bdeb68fb5604307f72b8cedda91..52963b7445a1e28c8f251c94a6220f5fe1dc92f6 100755 (executable)
--- a/cdfdist.py
+++ b/cdfdist.py
@@ -8,11 +8,15 @@ def main(argv=None):
         print "usage: python %s bins percent infile" % sys.argv[0]
         sys.exit(1)
 
-    bins = int(argv[0])
-    percent = int(argv[1])
-    infilename = argv[2]
+    bins = int(argv[1])
+    percent = int(argv[2])
+    infilename = argv[3]
 
-    cdfDist(bins, percent, infilename)
+    printCdfDist(bins, percent, infilename)
+
+
+def printCdfDist(bins, percent, infilename):
+    print cdfDist(bins, percent, infilename)
 
 
 def cdfDist(bins, percent, infilename):
@@ -30,7 +34,7 @@ def cdfDist(bins, percent, infilename):
             index += 1
 
     infile.close()
-    print binsList
+    return binsList
 
 
 if __name__ == "__main__":