+def makeParser(usage=""):
+ parser = optparse.OptionParser(usage=usage)
+ parser.add_option("--repeats", action="store_true", dest="repeats")
+ parser.add_option("--cache", type="int", dest="cachePages")
+
+ configParser = getConfigParser()
+ section = "checkSNPrmask"
+ repeats = getConfigBoolOption(configParser, section, "repeats", False)
+ cachePages = getConfigOption(configParser, section, "cachePages", None)
+
+ parser.set_defaults(repeats=repeats, cachePages=cachePages)
+
+ return parser
+
+