first pass cleanup of cistematic/genomes; change bamPreprocessing

[erange.git] / colsum.py

diff --git a/colsum.py b/colsum.py
index 703bd5ce47ae4b136321c42a6debe8f6b7908d01..643aaeaa82b8bc0c444e33ae909d4f5859e2b1d7 100755 (executable)
--- a/colsum.py
+++ b/colsum.py
@@ -4,7 +4,7 @@ def main(argv=None):
     if not argv:
         argv = sys.argv
 
-    print "version 1.2"
+    print "colsum: version 1.3"
     if len(argv) < 3:
         print "usage: python %s field filename" % argv[0]
         print "\n\tfields are counted starting at zero.\n"
@@ -28,7 +28,7 @@ def colsum(fieldID, filename):
                 count += float(fields[fieldID])
             else:
                 count += int(fields[fieldID])
-        except ValueError:
+        except (ValueError, IndexError):
             pass
 
     infile.close()