- firstDict = {}
- firstfile = open(firstfileName)
- for line in firstfile:
- fields = line.strip().split()
- firstDict[fields[1]] = fields[-1]
-
- firstfile.close()
-
- expandedDict = {}
- gidDict = {}
- expandedfile = open(expandedfileName)
- for line in expandedfile:
- fields = line.strip().split()
- expandedDict[fields[1]] = fields[-1]
- gidDict[fields[1]] = fields[0]
-
- expandedfile.close()
+ firstDict = getRPKMDict(firstfileName)
+ gidDict, expandedDict = getRPKMDict(expandedfileName, getGIDDict=True)