-def combineRPKMs(firstfileName, expandedfileName, finalfileName, outfileName, doFraction=False):
- firstfile = open(firstfileName)
- expandedfile = open(expandedfileName)
- finalfile = open(finalfileName)
- outfile = open(outfileName, "w")
+def makeParser(usage=""):
+ parser = optparse.OptionParser(usage=usage)
+ parser.add_option("--withmultifraction", action="store_true", dest="doFraction")