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erange version 4.0a dev release
[erange.git]
/
combinerds.py
diff --git
a/combinerds.py
b/combinerds.py
index 7eac48affb101be5a1a7e570b3c152c86c58247e..4c826b04ed6c668a3d5b2a66ee4b842789a483a0 100755
(executable)
--- a/
combinerds.py
+++ b/
combinerds.py
@@
-10,9
+10,9
@@
except:
pass
import sys
pass
import sys
-
from commoncode import r
eadDataset
+
import R
eadDataset
-print
'%s: version 1.1' % sys.argv[0]
+print
"combinerds: version 1.2"
def main(argv=None):
def main(argv=None):
@@
-43,16
+43,16
@@
def main(argv=None):
print "destination RDS: %s" % datafile
if '--initrna' in argv:
print "destination RDS: %s" % datafile
if '--initrna' in argv:
- rds =
r
eadDataset(datafile, initialize=True, datasetType='RNA')
+ rds =
ReadDataset.R
eadDataset(datafile, initialize=True, datasetType='RNA')
elif '--init' in argv:
elif '--init' in argv:
- rds =
r
eadDataset(datafile, initialize=True)
+ rds =
ReadDataset.R
eadDataset(datafile, initialize=True)
withFlag = ''
if '--flag' in argv:
withFlag = argv[sys.argv.index('-flag') + 1]
print "restrict to flag = %s" % withFlag
withFlag = ''
if '--flag' in argv:
withFlag = argv[sys.argv.index('-flag') + 1]
print "restrict to flag = %s" % withFlag
- rds =
r
eadDataset(datafile, verbose=True, cache=doCache)
+ rds =
ReadDataset.R
eadDataset(datafile, verbose=True, cache=doCache)
if cachePages > rds.getDefaultCacheSize():
rds.setDBcache(cachePages)
if cachePages > rds.getDefaultCacheSize():
rds.setDBcache(cachePages)