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erange version 4.0a dev release
[erange.git]
/
docs
/
regionCounts.sh
diff --git
a/docs/regionCounts.sh
b/docs/regionCounts.sh
index 13c60ad4bb6fd58fed267ff0ffb9772e728bb562..8875513266f785ee537137ec841c790d6d014e04 100644
(file)
--- a/
docs/regionCounts.sh
+++ b/
docs/regionCounts.sh
@@
-3,7
+3,7
@@
echo 'regionCounts.sh: version 1.0'
cachepages=""
if [ $# -eq 3 ]; then
cachepages=""
if [ $# -eq 3 ]; then
- cachepages="-cache "$3
+ cachepages="-
-
cache "$3
fi
if [ $# -lt 2 ]; then
fi
if [ $# -lt 2 ]; then
@@
-19,7
+19,7
@@
else
prefix=`echo $line | cut -f 1 -d ','`
rds=`echo $line | cut -f 2 -d ','`
if [ -e $rds ]; then
prefix=`echo $line | cut -f 1 -d ','`
rds=`echo $line | cut -f 2 -d ','`
if [ -e $rds ]; then
- python $ERANGEPATH/regionCounts.py $1 $rds $prefix.partcount -
force -nomerge
-rpkm $cachepages
+ python $ERANGEPATH/regionCounts.py $1 $rds $prefix.partcount -
-force --nomerge -
-rpkm $cachepages
else
echo "could not find $rds - skipping"
python $ERANGEPATH/recordLog.py regionCounts.log regionCounts.sh "could not find $rds - skipping"
else
echo "could not find $rds - skipping"
python $ERANGEPATH/recordLog.py regionCounts.log regionCounts.sh "could not find $rds - skipping"