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first pass cleanup of cistematic/genomes; change bamPreprocessing
[erange.git]
/
featureIntersects.py
diff --git
a/featureIntersects.py
b/featureIntersects.py
index c24b79edb312fae6c0b19f0d7e3d3ffb45d12984..733849902899ceb75017995ea50bd209aa66c2f9 100755
(executable)
--- a/
featureIntersects.py
+++ b/
featureIntersects.py
@@
-54,7
+54,7
@@
def makeParser(usage=""):
def featureIntersects(tabFileName, cistype="TFBSCONSSITES", radius=100):
posList = getPositionList(tabFileName)
def featureIntersects(tabFileName, cistype="TFBSCONSSITES", radius=100):
posList = getPositionList(tabFileName)
- feats = featuresIntersecting("h
uman
", posList, radius, cistype)
+ feats = featuresIntersecting("h
sapiens
", posList, radius, cistype)
featkeys = feats.keys()
featkeys.sort()
for (chrom, pos) in featkeys:
featkeys = feats.keys()
featkeys.sort()
for (chrom, pos) in featkeys: