print fullchrom
hitRDS.memSync(fullchrom, index=True)
for (start, stop, gid, length) in locusByChromDict[chrom]:
- if not gidDict.has_key(gid):
+ if not gid in gidDict:
gidDict[gid] = {"count": 0, "length": length}
gidDict[gid]["count"] += hitRDS.getCounts(fullchrom, start, stop, uniqs=doUniqs, multi=doMulti, splices=doSplices)