Rewrite of findall.py to clean code. Configuration tested using

[erange.git] / getNovelSNPs.py

diff --git a/getNovelSNPs.py b/getNovelSNPs.py
index e95d72693c76df13871da4cf809c99e43c41d36a..4091281c8fe0f5410090b23db7276496fe49d6ed 100755 (executable)
--- a/getNovelSNPs.py
+++ b/getNovelSNPs.py
@@ -68,6 +68,7 @@ def doNotProcessLine(line):
 
 def getNovelSNPInfo(genome, snpEntry, hg):
     fields = snpEntry.split()
+    #TODO: refactor naming. is fields[8] rpkm?
     if fields[8].find("N\A") == -1: 
         return snpEntry
     else:
@@ -92,4 +93,4 @@ def getNovelSNPInfo(genome, snpEntry, hg):
 
 
 if __name__ == "__main__":
-    main(sys.argv)
+    main(sys.argv)
\ No newline at end of file