development checkpoint

[erange.git] / getNovelSNPs.py

diff --git a/getNovelSNPs.py b/getNovelSNPs.py
index 0936a7f3cc2c1f967de17d695090b4a2154c4134..e95d72693c76df13871da4cf809c99e43c41d36a 100755 (executable)
--- a/getNovelSNPs.py
+++ b/getNovelSNPs.py
@@ -11,7 +11,7 @@ import string
 from cistematic.genomes import Genome 
 from commoncode import writeLog
 
-print "%prog: version 1.5"
+print "getNovelSNPs: version 1.6"
 
 try:
     import psyco
@@ -68,7 +68,6 @@ def doNotProcessLine(line):
 
 def getNovelSNPInfo(genome, snpEntry, hg):
     fields = snpEntry.split()
-    #TODO: refactor naming. is fields[8] rpkm?
     if fields[8].find("N\A") == -1: 
         return snpEntry
     else:
@@ -93,4 +92,4 @@ def getNovelSNPInfo(genome, snpEntry, hg):
 
 
 if __name__ == "__main__":
-    main(sys.argv)
\ No newline at end of file
+    main(sys.argv)