snpPropertiesList = getSNPs(hitfile, uniqStartMin, totalRatioMin, doCache, cachePages, doSplices, forceChr)
for snpEntry in snpPropertiesList:
outline = "%1.2f\t%1.2f\t%s\t%d\t%d\t%d\t\t%d\t%s\n" % snpEntry
snpPropertiesList = getSNPs(hitfile, uniqStartMin, totalRatioMin, doCache, cachePages, doSplices, forceChr)
for snpEntry in snpPropertiesList:
outline = "%1.2f\t%1.2f\t%s\t%d\t%d\t%d\t\t%d\t%s\n" % snpEntry
uniqBaseDict = {change: 1}
totalBaseDict = {change: 1}
if mismatchDict.has_key(change_at):
uniqBaseDict = {change: 1}
totalBaseDict = {change: 1}
if mismatchDict.has_key(change_at):