Rewrite of findall.py to clean code. Configuration tested using

[erange.git] / getSNPs.py

diff --git a/getSNPs.py b/getSNPs.py
index f6071ae444be9ca294ac4c4ff39b50a74e3d0cb4..f5826751fdecdc3643967ea8e04df8331fbf94e3 100755 (executable)
--- a/getSNPs.py
+++ b/getSNPs.py
@@ -75,7 +75,7 @@ def makeParser(usage=""):
     forceChr = getConfigBoolOption(configParser, section, "forceChr", False)
     cachePages = getConfigIntOption(configParser, section, "cachePages", 0)
 
-    parser.set_defaults(doSplices=True, forceChr=False, cachePages=0)
+    parser.set_defaults(doSplices=doSplices, forceChr=forceChr, cachePages=cachePages)
 
     return parser