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Rewrite of findall.py to clean code. Configuration tested using
[erange.git]
/
getfasta.py
diff --git
a/getfasta.py
b/getfasta.py
index ea347e4aa44f1a21a0b7c54d11b407352ce91b6f..acae47d68c896d14cf7b894e63adac2552483291 100755
(executable)
--- a/
getfasta.py
+++ b/
getfasta.py
@@
-36,7
+36,7
@@
def main(argv=None):
outfilename = args[2]
getfasta(genome, regionfile, outfilename, options.seqsize, options.minHitThresh,
outfilename = args[2]
getfasta(genome, regionfile, outfilename, options.seqsize, options.minHitThresh,
- options.topRegions, options.maxsize, options.usePeaks, options.hit
F
ile,
+ options.topRegions, options.maxsize, options.usePeaks, options.hit
f
ile,
options.doCache, options.doCompact)
options.doCache, options.doCompact)