+def makeParser(usage=""):
+ parser = optparse.OptionParser(usage=usage)
+ parser.add_option("--verbose", action="store_true", dest="doVerbose",
+ help="show verbose messages [default: False]")
+ parser.add_option("--spacer", type="int", dest="spacer",
+ help="number of spacer NTs to use [default: 2")
+
+ configParser = getConfigParser()
+ section = "getsplicefa"
+ doVerbose = getConfigIntOption(configParser, section, "doVerbose", False)
+ spacer = getConfigIntOption(configParser, section, "spacer", 2)
+
+ parser.set_defaults(doVerbose=doVerbose, spacer=spacer)
+
+ return parser
+
+