Release version for Erange 4.0a

[erange.git] / test / testFeatureIntersects.py

diff --git a/test/testFeatureIntersects.py b/test/testFeatureIntersects.py
new file mode 100644 (file)
index 0000000..9633f8c
--- /dev/null
+++ b/test/testFeatureIntersects.py
@@ -0,0 +1,73 @@
+
+import unittest
+import os
+from erange import featureIntersects
+
+
+class TestFeatureIntersects(unittest.TestCase):
+
+    testInputFile = "erangeTestFeatureIntersects"
+
+
+    def setUp(self):
+        cdffile = open(self.testInputFile, "w")
+        cdffile.write("line1\tchr1\t30\t60\n")
+        cdffile.write("line2\tchr1\t90\t99\n")
+        cdffile.write("line3\tchr1\t5\t80\n")
+        cdffile.write("line4\tchr2\t10\t14\n")
+        cdffile.write("line4\tnot to be processed\n")
+        cdffile.write("line5\tchr2\t10\t14\n")
+        cdffile.close()
+
+
+    def tearDown(self):
+        try:
+            os.remove(self.testInputFile)
+        except OSError:
+            print "position file does not exist"
+
+
+    #TODO: write test
+    def testFeatureIntersects(self):
+        pass
+
+
+    #TODO: write test
+    def testGetPositionList(self):
+        pass
+
+
+    #TODO: write test
+    def testMain(self):
+        argv = ["cdfdist"]
+        self.assertRaises(SystemExit, featureIntersects.main, argv)
+        argv = ["cdfdist", self.testInputFile]
+        featureIntersects.main(argv)
+
+
+    def testMakeParser(self):
+        parser = featureIntersects.makeParser("")
+        argv = []
+        (options, args) = parser.parse_args(argv)
+        self.assertEqual([], args)
+        argv = [self.testInputFile]
+        (options, args) = parser.parse_args(argv)
+        self.assertEqual(self.testInputFile, args[0])
+        self.assertEqual("TFBSCONSSITES", options.cistype)
+        self.assertEqual(100, options.radius)
+        argv = [self.testInputFile, "--cistype", "test", "--radius", "50"]
+        (options, args) = parser.parse_args(argv)
+        self.assertEqual("test", options.cistype)
+        self.assertEqual(50, options.radius)
+
+
+def suite():
+    suite = unittest.TestSuite()
+    suite.addTest(unittest.makeSuite(TestFeatureIntersects))
+
+    return suite
+
+
+if __name__ == "__main__":
+    #import sys;sys.argv = ['', 'Test.testName']
+    unittest.main()
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