erange version 4.0a dev release

[erange.git] / test / testGetFasta.py

diff --git a/test/testGetFasta.py b/test/testGetFasta.py
index cb71685b0089c13deda115c290734ffa28de7c28..9ea5408ba70336c04a3f729dc0cbbe2f51c3acff 100644 (file)
--- a/test/testGetFasta.py
+++ b/test/testGetFasta.py
@@ -5,9 +5,9 @@ Created on Aug 27, 2010
 '''
 import unittest
 import os
-from Erange import getfasta
-#from Erange import ReadDataset
-from Erange.commoncode import readDataset
+from erange import getfasta
+#from erange import ReadDataset
+from erange import ReadDataset
 
 testDBName = "testRDS.rds"
 
@@ -133,7 +133,7 @@ class TestGetFasta(unittest.TestCase):
     # need to check to see if the issue might be with commoncode.findPeak as there is a lot of questionable
     # logic in that one
     def testGetRegionUsingRDS(self):
-        rds = readDataset(testDBName, initialize=True, datasetType="DNA", verbose=False)
+        rds = ReadDataset.ReadDataset(testDBName, initialize=True, datasetType="DNA", verbose=False)
         rds.insertMetadata([("readsize", "100")])
         rdsEntryList = [("testRead", "chr1", 10, 100, "+", 1.0, "", "")]
         rds.insertUniqs(rdsEntryList)