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erange version 4.0a dev release
[erange.git]
/
test
/
testGetSNPs.py
diff --git
a/test/testGetSNPs.py
b/test/testGetSNPs.py
index 68ef8c06ce26cdcd0595637382b7cc581f77461e..81b4d2cad69c6455adef42f6481fa207cde95509 100644
(file)
--- a/
test/testGetSNPs.py
+++ b/
test/testGetSNPs.py
@@
-4,14
+4,14
@@
Created on Jun 4, 2010
@author: sau
'''
import os, unittest
@author: sau
'''
import os, unittest
-from
Erange.commoncode import r
eadDataset
-from
E
range import getSNPs
+from
erange import R
eadDataset
+from
e
range import getSNPs
class TestGetSNPs(unittest.TestCase):
def setUp(self):
class TestGetSNPs(unittest.TestCase):
def setUp(self):
- self.rdsDNA =
r
eadDataset("testDNARDSForUnitTests.rds", True, "DNA", verbose=True)
+ self.rdsDNA =
ReadDataset.R
eadDataset("testDNARDSForUnitTests.rds", True, "DNA", verbose=True)
uniqueInsertList = [("uniqueID1", "chr1", 10, 20, "+", 1.0, "", ""),
("uniqueID2", "chr1", 100, 200, "+", 1.0, "", ""),
uniqueInsertList = [("uniqueID1", "chr1", 10, 20, "+", 1.0, "", ""),
("uniqueID2", "chr1", 100, 200, "+", 1.0, "", ""),
@@
-26,6
+26,7
@@
class TestGetSNPs(unittest.TestCase):
self.rdsDNA.insertUniqs(uniqueInsertList)
self.rdsDNA.insertMulti(multiInsertList)
self.rdsDNA.insertUniqs(uniqueInsertList)
self.rdsDNA.insertMulti(multiInsertList)
+ self.rdsDNA.insertMetadata([("readsize", 100)])
def tearDown(self):
def tearDown(self):