erange version 4.0a dev release

[erange.git] / test / testGetSNPs.py

diff --git a/test/testGetSNPs.py b/test/testGetSNPs.py
index 68ef8c06ce26cdcd0595637382b7cc581f77461e..81b4d2cad69c6455adef42f6481fa207cde95509 100644 (file)
--- a/test/testGetSNPs.py
+++ b/test/testGetSNPs.py
@@ -4,14 +4,14 @@ Created on Jun 4, 2010
 @author: sau
 '''
 import os, unittest
-from Erange.commoncode import readDataset
-from Erange import getSNPs
+from erange import ReadDataset
+from erange import getSNPs
 
 
 class TestGetSNPs(unittest.TestCase):
 
     def setUp(self):
-        self.rdsDNA = readDataset("testDNARDSForUnitTests.rds", True, "DNA", verbose=True)
+        self.rdsDNA = ReadDataset.ReadDataset("testDNARDSForUnitTests.rds", True, "DNA", verbose=True)
 
         uniqueInsertList = [("uniqueID1", "chr1", 10, 20, "+", 1.0, "", ""),
                             ("uniqueID2", "chr1", 100, 200, "+", 1.0, "", ""),
@@ -26,6 +26,7 @@ class TestGetSNPs(unittest.TestCase):
 
         self.rdsDNA.insertUniqs(uniqueInsertList)
         self.rdsDNA.insertMulti(multiInsertList)
+        self.rdsDNA.insertMetadata([("readsize", 100)])
 
 
     def tearDown(self):