erange version 4.0a dev release

[erange.git] / test / testMakeBamFromRds.py

diff --git a/test/testMakeBamFromRds.py b/test/testMakeBamFromRds.py
index 8c0df53ca4532c08b71c90a5d24f3c0fdc72bf45..a6878802fe7ae344e26c275fd47ad26928b49316 100644 (file)
--- a/test/testMakeBamFromRds.py
+++ b/test/testMakeBamFromRds.py
@@ -4,7 +4,7 @@ Created on Jun 4, 2010
 @author: sau
 '''
 import unittest
-from Erange import MakeBamFromRds
+from erange import MakeBamFromRds
 
 
 class TestMakeBamFromRds(unittest.TestCase):
@@ -18,6 +18,17 @@ class TestMakeBamFromRds(unittest.TestCase):
         pass
 
 
+    #TODO: finish test
+    def testFixSpliceSense(self):
+        seq = "NNNGTAGNNN"
+        startRight = 7
+        stopLeft = 3
+        sense, count = MakeBamFromRds.fixSpliceSense(seq, startRight, stopLeft)
+        self.assertEquals("+", sense)
+        self.assertEquals(0, count)
+
+
+    #TODO: finish test
     def testGetMismatches(self):
         mismatchString = "3A10T"
         self.assertEqual(mismatchString, MakeBamFromRds.getMismatches("A3G, T10A"))