@author: sau
'''
import unittest
-from Erange import MakeBamFromRds
+from erange import MakeBamFromRds
class TestMakeBamFromRds(unittest.TestCase):
pass
+ #TODO: finish test
+ def testFixSpliceSense(self):
+ seq = "NNNGTAGNNN"
+ startRight = 7
+ stopLeft = 3
+ sense, count = MakeBamFromRds.fixSpliceSense(seq, startRight, stopLeft)
+ self.assertEquals("+", sense)
+ self.assertEquals(0, count)
+
+
+ #TODO: finish test
def testGetMismatches(self):
mismatchString = "3A10T"
self.assertEqual(mismatchString, MakeBamFromRds.getMismatches("A3G, T10A"))