+ #TODO: write test
+ def testGetPairedReadNumberSuffix(self):
+ pass
+
+
+ #TODO: write test
+ def testGetParser(self):
+ pass
+
+
+ #TODO: write test
+ def testGetRDSEntry(self):
+ pass
+
+
+ #TODO: write test
+ def testGetRDSSpliceEntry(self):
+ pass
+
+
+ def testGetReadSense(self):
+ reverse = False
+ self.assertEqual("+", MakeRdsFromBam.getReadSense(reverse))
+ reverse = True
+ self.assertEqual("-", MakeRdsFromBam.getReadSense(reverse))
+
+
+ def testGetSpliceBounds(self):
+ start, startR, stopL, stopR = MakeRdsFromBam.getSpliceBounds(0, 10, [(1,2), (3,6), (1,2)])
+
+ self.assertEqual(start, 0, "incorrect start position for 262")
+ self.assertEqual(startR, 8, "incorrect right start position for 262")
+ self.assertEqual(stopL, 2, "incorrect left stop position for 262")
+ self.assertEqual(stopR, 10, "incorrect right stop position for 262")
+
+
+ #TODO: write test
+ def testIsPairedRead(self):
+ pass
+
+