#!/usr/bin/python 3
+"""Program to search through MEME report to find letter-probabilties matrix
+"""
+
+# Copyright (2015) Diane Trout & California Institute of Technology
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along
+# with this program; if not, write to the Free Software Foundation, Inc.,
+# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
import argparse
import re
import os
def main(cmdline=None):
- #filename = '/woldlab/castor/home/kfisher/ChIA/AliNodes/DNase4/Wellington/PP_DE_analysis/Consolidated_Wellington_promoters_3xUp_10FPKM.cyteConnected_myocyteFootprints.20rad.MEME2_maxw25/meme.txt'
- #output_dir = '.'
-
parser = make_parser()
args = parser.parse_args(cmdline)