eland_config/forms.py

   1 from __future__ import unicode_literals
   2
   3 from django import forms
   4 from django.forms.util import ErrorList
   5
   6
   7 SPECIES_LIST = [#('--choose--', '--Choose--'),
   8                 ('hg18', 'Homo sapiens (Hg18)'),
   9                 ('Mm8', 'Mus musculus (Mm8)'),
  10                 ('arabv6', 'Arabadopsis Thaliana v6'),
  11                 ('other', 'Other species (Include in description)')]
  12
  13
  14 class DivErrorList(ErrorList):
  15   def __unicode__(self):
  16     return self.as_divs()
  17
  18   def as_divs(self):
  19     if not self: return u''
  20     return u'<div class="errorlist">%s</div>' % (''.join([u'<div class="error">%s</div>' % e for e in self]))
  21
  22
  23
  24 class ConfigForm(forms.Form):
  25
  26   flow_cell_number = forms.CharField(min_length=2)
  27   run_date = forms.DateTimeField()
  28   advanced_run = forms.BooleanField(required=False)
  29   read_length = forms.IntegerField(min_value=1, initial=32)
  30   #eland_repeat = forms.BooleanField()
  31
  32   #needs a for loop or something to allow for n configurations
  33   #analysis_type = forms.ChoiceField(choices=[('eland','eland')])
  34   lane1_species = forms.ChoiceField(choices=SPECIES_LIST)
  35   lane1_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  36
  37   lane2_species = forms.ChoiceField(choices=SPECIES_LIST)
  38   lane2_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  39
  40   lane3_species = forms.ChoiceField(choices=SPECIES_LIST)
  41   lane3_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  42
  43   lane4_species = forms.ChoiceField(choices=SPECIES_LIST)
  44   lane4_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  45
  46   lane5_species = forms.ChoiceField(choices=SPECIES_LIST)
  47   lane5_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  48
  49   lane6_species = forms.ChoiceField(choices=SPECIES_LIST)
  50   lane6_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  51
  52   lane7_species = forms.ChoiceField(choices=SPECIES_LIST)
  53   lane7_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  54
  55   lane8_species = forms.ChoiceField(choices=SPECIES_LIST)
  56   lane8_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
  57
  58   notes = forms.CharField(widget=forms.Textarea(attrs={'cols':'70'}), required=False)
  59
  60   #lane_specific_read_length = forms.IntegerField(min_value=1)
  61
  62   #eland_genome_lanes = forms.MultipleChoiceField(choices=[('lane1','1'),
  63   #                                              ('lane2','2'),
  64   #                                              ('lane3','3'),
  65   #                                              ('lane4','4'),
  66   #                                              ('lane5','5'),
  67   #                                              ('lane6','6'),
  68   #                                              ('lane7','7'),
  69   #                                              ('lane8','8') ])
  70
  71   #eland_genome = forms.ChoiceField(choices=)
  72
  73   #use_bases_lanes = forms.MultipleChoiceField(choices=[('lane1','1'),
  74   #                                              ('lane2','2'),
  75   #                                              ('lane3','3'),
  76   #                                              ('lane4','4'),
  77   #                                              ('lane5','5'),
  78   #                                              ('lane6','6'),
  79   #                                              ('lane7','7'),
  80   #                                              ('lane8','8') ])
  81
  82   #use_bases_mask = forms.CharField()
  83
  84   #sequence_format = forms.ChoiceField(choices=[('scarf', 'scarf')])
  85
  86
  87
  88   #subject = forms.CharField(max_length=100)
  89   #message = forms.CharField()
  90   #sender = forms.EmailField()
  91   #cc_myself = forms.BooleanField()
  92
  93   def as_custom(self):
  94     """
  95     Displays customized html output
  96     """
  97     html = []
  98
  99     fcn = self['flow_cell_number']
 100
 101     html.append(fcn.label_tag() + ': ' + str(fcn) + str(fcn.errors) + '<br />')
 102
 103     run_date = self['run_date']
 104     html.append(run_date.label_tag() + ': ' + str(run_date) + str(run_date.errors) + '<br />')
 105
 106     arun = self['advanced_run']
 107     html.append(arun.label_tag() + ': ' + str(arun) + str(arun.errors) + '<br />')
 108
 109     rl = self['read_length']
 110     html.append(rl.label_tag() + ': ' + str(rl) + str(rl.errors) + '<br /><br />')
 111
 112     html.append('<table border="0">')
 113     html.append(' <tr><td>%s</td><td>%s</td><td>%s</td></tr>' \
 114                 % ('Lane', 'Species', 'Description'))
 115
 116     l1s = self['lane1_species']
 117     l1d = self['lane1_description']
 118     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 119                 % ('1', str(l1s), str(l1s.errors), str(l1d), str(l1d.errors)))
 120
 121     l2s = self['lane2_species']
 122     l2d = self['lane2_description']
 123     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 124                 % ('2', str(l2s), str(l2s.errors), str(l2d), str(l2d.errors)))
 125
 126     l3s = self['lane3_species']
 127     l3d = self['lane3_description']
 128     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 129                 % ('3', str(l3s), str(l3s.errors), str(l3d), str(l3d.errors)))
 130
 131     l4s = self['lane4_species']
 132     l4d = self['lane4_description']
 133     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 134                 % ('4', str(l4s), str(l4s.errors), str(l4d), str(l4d.errors)))
 135
 136     l5s = self['lane5_species']
 137     l5d = self['lane5_description']
 138     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 139                 % ('5', str(l5s), str(l5s.errors), str(l5d), str(l5d.errors)))
 140
 141     l6s = self['lane6_species']
 142     l6d = self['lane6_description']
 143     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 144                 % ('6', str(l6s), str(l6s.errors), str(l6d), str(l6d.errors)))
 145
 146     l7s = self['lane7_species']
 147     l7d = self['lane7_description']
 148     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 149                 % ('7', str(l7s), str(l7s.errors), str(l7d), str(l7d.errors)))
 150
 151     l8s = self['lane8_species']
 152     l8d = self['lane8_description']
 153     html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
 154                 % ('8', str(l8s), str(l8s.errors), str(l8d), str(l8d.errors)))
 155
 156     html.append('</table><br />')
 157
 158     notes = self['notes']
 159     html.append('<p>Notes:</p>')
 160     html.append(' %s<br />' % (str(notes)))
 161
 162     return '\n'.join(html)
 163
 164
 165