encode_submission/dt-overrides.turtle

   1 ##
   2 ## Override submission ID to library URN names for our libraries
   3 ## whose names either lack, or have the wrong library ID string
   4 ## embedded in them.
   5 ##
   6
   7 @base <file:///home/diane/proj/solexa/htsworkflow/extra/ucsc_encode_submission/no-lib.sparql> .
   8 @prefix ucscSubmission:<http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#> .
   9
  10 # woldlab-hepg2-rnaseq-2009dec
  11 <http://encodesubmit.ucsc.edu/pipeline/show/805>
  12     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
  13
  14 # woldlab-hepg2-rnaseq-2009dec-part2
  15 <http://encodesubmit.ucsc.edu/pipeline/show/810>
  16     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
  17
  18 # woldlab-hepg2-rnaseq-2009dec-part3
  19 <http://encodesubmit.ucsc.edu/pipeline/show/869>
  20     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
  21
  22 # woldlab-rnaseq-GM12878-rep1-stranded-2010Jan15
  23 <http://encodesubmit.ucsc.edu/pipeline/show/870>
  24     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11011/> .
  25
  26 # woldlab-hepg2-rnaseq-2010Jan-part4
  27 <http://encodesubmit.ucsc.edu/pipeline/show/897>
  28     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10879/> .
  29
  30 # woldlab-gm12878-directional-rep2-rnaseq-2010Jan06
  31 <http://encodesubmit.ucsc.edu/pipeline/show/898>
  32     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
  33
  34 # woldlab-K562-directional-rnaseq-rep1-2010Jan6
  35 <http://encodesubmit.ucsc.edu/pipeline/show/903>
  36     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
  37
  38 # woldlab-K562-directional-rnaseq-rep2-2010jan9
  39 <http://encodesubmit.ucsc.edu/pipeline/show/904>
  40     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11007/> .
  41
  42 # woldlab hESC 10886 rep1 2009Jan13
  43 <http://encodesubmit.ucsc.edu/pipeline/show/1026>
  44   ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11286/> .
  45
  46 # woldlab 2010Jun15 1x75-Directional-NHEK-Rep1
  47 <http://encodesubmit.ucsc.edu/pipeline/show/1483>
  48     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11204/> .
  49
  50 # woldlab Jun18 1x75-Directional-H1-hESC-Rep2
  51 <http://encodesubmit.ucsc.edu/pipeline/show/1626>
  52     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11009/> .
  53
  54 # woldlab jun 18 1x75-Directional-GM12878-Rep1
  55 <http://encodesubmit.ucsc.edu/pipeline/show/1631>
  56     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11011/> .
  57
  58 # woldlab jun 18  1x75-Directional-GM12878-Rep2
  59 <http://encodesubmit.ucsc.edu/pipeline/show/1632>
  60     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
  61
  62 # woldlab jun 18 1x75-Directional-H1-hESC-Rep1
  63 <http://encodesubmit.ucsc.edu/pipeline/show/1633>
  64     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10947/> .
  65
  66 # woldlab jun 18 1x75-Directional-HeLa-Rep1
  67 <http://encodesubmit.ucsc.edu/pipeline/show/1634>
  68     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11208/> .
  69
  70 # woldlab jun 18 1x75-Directional-HeLa-Rep2
  71 <http://encodesubmit.ucsc.edu/pipeline/show/1635>
  72     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11207/> .
  73
  74 # woldlab jun 18 1x75-Directional-HepG2-Rep1
  75 <http://encodesubmit.ucsc.edu/pipeline/show/1636>
  76     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11210/> .
  77
  78 # woldlab jun 18 1x75-Directional-K562-Rep1
  79 <http://encodesubmit.ucsc.edu/pipeline/show/1637>
  80     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11008/> .
  81
  82 # woldlab jun 18 1x75-Directional-HepG2-Rep2
  83 <http://encodesubmit.ucsc.edu/pipeline/show/1638>
  84     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11209/> .
  85
  86 # woldlab jun 18 1x75-Directional-HUVEC-Rep1
  87 <http://encodesubmit.ucsc.edu/pipeline/show/1639>
  88     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11206/> .
  89
  90 # woldlab jun 18 1x75-Directional-HUVEC-Rep2
  91 <http://encodesubmit.ucsc.edu/pipeline/show/1645>
  92     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11205/> .
  93
  94 # woldlab jun 18 1x75-Directional-K562-Rep2
  95 <http://encodesubmit.ucsc.edu/pipeline/show/1646>
  96     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11007/> .
  97
  98 # woldlab June  2x75-GM12878-Rep2
  99 <http://encodesubmit.ucsc.edu/pipeline/show/1856>
 100     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10515/> .
 101
 102 #2010 jul 9corrected fastqs
 103 <http://encodesubmit.ucsc.edu/pipeline/show/1874>
 104      ucscSubmission:ignore "1" .
 105 #    ucscSubmission:library_urn "
 106
 107 # 2010-11-05 Correction 1x75-Directional-GM12878-Rep1.tgz
 108 <http://encodesubmit.ucsc.edu/pipeline/show/2926>
 109     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
 110
 111 # 1x75-Directional-GM12878-Rep2
 112 <http://encodesubmit.ucsc.edu/pipeline/show/2930>
 113     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11010/> .
 114
 115 # 1x75-Directional-H1-hESC-Rep1
 116 <http://encodesubmit.ucsc.edu/pipeline/show/2931>
 117     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/10947/> .
 118
 119 # 1x75-Directional-H1-hESC-Rep2
 120 <http://encodesubmit.ucsc.edu/pipeline/show/2932>
 121     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11205/> .
 122
 123 # 1x75-Directional-HUVEC-Rep1
 124 <http://encodesubmit.ucsc.edu/pipeline/show/2933>
 125     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11206/> .
 126
 127 # 1x75-Directional-HUVEC-Rep2
 128 <http://encodesubmit.ucsc.edu/pipeline/show/2934>
 129     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11205/> .
 130
 131 # 1x75-Directional-HeLa-Rep1
 132 <http://encodesubmit.ucsc.edu/pipeline/show/2935>
 133     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11208/> .
 134
 135 # 1x75-Directional-HeLa-Rep2
 136 <http://encodesubmit.ucsc.edu/pipeline/show/2936>
 137     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11207/> .
 138
 139 # 1x75-Directional-HepG2-Rep1
 140 <http://encodesubmit.ucsc.edu/pipeline/show/2937>
 141     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11210/> .
 142
 143 # 1x75-Directional-HepG2-Rep2
 144 <http://encodesubmit.ucsc.edu/pipeline/show/2938>
 145     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11209/> .
 146
 147 # 1x75-Directional-K562-Rep1
 148 <http://encodesubmit.ucsc.edu/pipeline/show/2939>
 149     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11008/> .
 150
 151 # 1x75-Directional-K562-Rep2
 152 <http://encodesubmit.ucsc.edu/pipeline/show/2940>
 153     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11007/> .
 154
 155 # 1x75-Directional-NHEK-Rep1
 156 <http://encodesubmit.ucsc.edu/pipeline/show/2941>
 157     ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11204/> .
 158
 159 # "3438 fastq resubmit"
 160 <http://encodesubmit.ucsc.edu/pipeline/show/4607>
 161   ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/02970/> .
 162
 163 # "3439 fastq resubmit"
 164 <http://encodesubmit.ucsc.edu/pipeline/show/4608>
 165   ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/02973/> .
 166
 167 # "3437 Fastq re-submission"
 168 <http://encodesubmit.ucsc.edu/pipeline/show/4609>
 169   ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/02971/> .
 170
 171 # "1x75-Directional-HepG2-rep2-replace 3522"
 172 <http://encodesubmit.ucsc.edu/pipeline/show/4797>
 173   ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11209/> .
 174
 175 # "1x75-Directional-HepG2-rep1 replacement of 3521"
 176 <http://encodesubmit.ucsc.edu/pipeline/show/4798>
 177   ucscSubmission:library_urn <http://jumpgate.caltech.edu/library/11210/> .
 178