extra/ucsc_encode_submission/dt-overrides.turtle

   1 ##
   2 ## Override submission ID to library URN names for our libraries
   3 ## whose names either lack, or have the wrong library ID string
   4 ## embedded in them.
   5 ##
   6
   7 @base <file:///home/diane/proj/solexa/htsworkflow/extra/ucsc_encode_submission/no-lib.sparql> .
   8 @prefix encodeSubmit:<http://jumpgate.caltech.edu/wiki/UCSCSubmissionOntology#> .
   9
  10 # woldlab-hepg2-rnaseq-2009dec
  11 <http://encodesubmit.ucsc.edu/pipeline/show/805>
  12     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
  13
  14 # woldlab-hepg2-rnaseq-2009dec-part2
  15 <http://encodesubmit.ucsc.edu/pipeline/show/810>
  16     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
  17
  18 # woldlab-hepg2-rnaseq-2009dec-part3\t
  19 <http://encodesubmit.ucsc.edu/pipeline/show/869>
  20     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
  21
  22 # woldlab-rnaseq-GM12878-rep1-stranded-2010Jan15
  23 <http://encodesubmit.ucsc.edu/pipeline/show/870>
  24     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011> .
  25
  26 # woldlab-hepg2-rnaseq-2010Jan-part4
  27 <http://encodesubmit.ucsc.edu/pipeline/show/897>
  28     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10879> .
  29
  30 # woldlab-gm12878-directional-rep2-rnaseq-2010Jan06
  31 <http://encodesubmit.ucsc.edu/pipeline/show/898>
  32     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
  33
  34 # woldlab-K562-directional-rnaseq-rep1-2010Jan6
  35 <http://encodesubmit.ucsc.edu/pipeline/show/903>
  36     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
  37
  38 # woldlab-K562-directional-rnaseq-rep2-2010jan9
  39 <http://encodesubmit.ucsc.edu/pipeline/show/904>
  40     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
  41
  42 # woldlab hESC 10886 rep1 2009Jan13
  43 <http://encodesubmit.ucsc.edu/pipeline/show/1026>
  44   encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11286> .
  45
  46 # woldlab 2010Jun15 1x75-Directional-NHEK-Rep1
  47 <http://encodesubmit.ucsc.edu/pipeline/show/1483>
  48     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204> .
  49
  50 # woldlab Jun18 1x75-Directional-H1-hESC-Rep2
  51 <http://encodesubmit.ucsc.edu/pipeline/show/1626>
  52     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11009> .
  53
  54 # woldlab jun 18 1x75-Directional-GM12878-Rep1
  55 <http://encodesubmit.ucsc.edu/pipeline/show/1631>
  56     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11011> .
  57
  58 # woldlab jun 18  1x75-Directional-GM12878-Rep2
  59 <http://encodesubmit.ucsc.edu/pipeline/show/1632>
  60     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
  61
  62 # woldlab jun 18 1x75-Directional-H1-hESC-Rep1
  63 <http://encodesubmit.ucsc.edu/pipeline/show/1633>
  64     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10947> .
  65
  66 # woldlab jun 18 1x75-Directional-HeLa-Rep1
  67 <http://encodesubmit.ucsc.edu/pipeline/show/1634>
  68     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208> .
  69
  70 # woldlab jun 18 1x75-Directional-HeLa-Rep2
  71 <http://encodesubmit.ucsc.edu/pipeline/show/1635>
  72     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207> .
  73
  74 # woldlab jun 18 1x75-Directional-HepG2-Rep1
  75 <http://encodesubmit.ucsc.edu/pipeline/show/1636>
  76     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210> .
  77
  78 # woldlab jun 18 1x75-Directional-K562-Rep1
  79 <http://encodesubmit.ucsc.edu/pipeline/show/1637>
  80     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008> .
  81
  82 # woldlab jun 18 1x75-Directional-HepG2-Rep2
  83 <http://encodesubmit.ucsc.edu/pipeline/show/1638>
  84     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209> .
  85
  86 # woldlab jun 18 1x75-Directional-HUVEC-Rep1
  87 <http://encodesubmit.ucsc.edu/pipeline/show/1639>
  88     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206> .
  89
  90 # woldlab jun 18 1x75-Directional-HUVEC-Rep2
  91 <http://encodesubmit.ucsc.edu/pipeline/show/1645>
  92     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
  93
  94 # woldlab jun 18 1x75-Directional-K562-Rep2
  95 <http://encodesubmit.ucsc.edu/pipeline/show/1646>
  96     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
  97
  98 # woldlab June  2x75-GM12878-Rep2
  99 <http://encodesubmit.ucsc.edu/pipeline/show/1856>
 100     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10515> .
 101
 102 #2010 jul 9corrected fastqs
 103 <http://encodesubmit.ucsc.edu/pipeline/show/1874>
 104      encodeSubmit:ignore "1" .
 105 #    encodeSubmit:library_urn "
 106
 107 # 2010-11-05 Correction 1x75-Directional-GM12878-Rep1.tgz
 108 <http://encodesubmit.ucsc.edu/pipeline/show/2926>
 109     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
 110
 111 # 1x75-Directional-GM12878-Rep2
 112 <http://encodesubmit.ucsc.edu/pipeline/show/2930>
 113     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11010> .
 114
 115 # 1x75-Directional-H1-hESC-Rep1
 116 <http://encodesubmit.ucsc.edu/pipeline/show/2931>
 117     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/10947> .
 118
 119 # 1x75-Directional-H1-hESC-Rep2
 120 <http://encodesubmit.ucsc.edu/pipeline/show/2932>
 121     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
 122
 123 # 1x75-Directional-HUVEC-Rep1
 124 <http://encodesubmit.ucsc.edu/pipeline/show/2933>
 125     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11206> .
 126
 127 # 1x75-Directional-HUVEC-Rep2
 128 <http://encodesubmit.ucsc.edu/pipeline/show/2934>
 129     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11205> .
 130
 131 # 1x75-Directional-HeLa-Rep1
 132 <http://encodesubmit.ucsc.edu/pipeline/show/2935>
 133     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11208> .
 134
 135 # 1x75-Directional-HeLa-Rep2
 136 <http://encodesubmit.ucsc.edu/pipeline/show/2936>
 137     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11207> .
 138
 139 # 1x75-Directional-HepG2-Rep1
 140 <http://encodesubmit.ucsc.edu/pipeline/show/2937>
 141     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11210> .
 142
 143 # 1x75-Directional-HepG2-Rep2
 144 <http://encodesubmit.ucsc.edu/pipeline/show/2938>
 145     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11209> .
 146
 147 # 1x75-Directional-K562-Rep1
 148 <http://encodesubmit.ucsc.edu/pipeline/show/2939>
 149     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11008> .
 150
 151 # 1x75-Directional-K562-Rep2
 152 <http://encodesubmit.ucsc.edu/pipeline/show/2940>
 153     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11007> .
 154
 155 # 1x75-Directional-NHEK-Rep1
 156 <http://encodesubmit.ucsc.edu/pipeline/show/2941>
 157     encodeSubmit:library_urn <http://jumpgate.caltech.edu/library/11204> .
 158