htswanalysis/scripts/analys_track_comm.py

   1 import urllib
   2 import urllib2
   3 import re
   4 import os
   5
   6 def getWebPage(url,params):
   7   pdata = urllib.urlencode(params)
   8   req = urllib2.Request(url,pdata)
   9   wpage = urllib2.urlopen(req)
  10   restext = wpage.read()
  11   wpage.close()
  12   return restext
  13
  14 def getProjects(mode,folder):
  15   varStatus = 'getting projects with newly defined tasks'
  16   url = 'http://myerslab.stanford.edu/analys_track/getProjects'
  17
  18   params = {'mode':mode}
  19   readw = getWebPage(url,params)
  20   #Check web response
  21   tempstr = re.sub(pattern="\n",repl="",string=readw)
  22   #match_str = re.compile(r"^<\?xml.+$")
  23   match_str = re.compile('^<\?xml.+$')
  24   if match_str.search(tempstr):
  25     # create file in curret folder
  26     file_path = os.path.join(folder,'Projects.xml')
  27     f = open(file_path, 'w')
  28     f.write(readw)
  29     f.close()
  30     varStatus = mode+' Projects.xml created.'
  31   else:
  32     varStatus = 'Failed retrieving valid Projects.xml file. Server returned:\n'+readw
  33
  34   return varStatus
  35
  36 def updTaskStatus(taskid,updMsg):
  37   url = 'http://myerslab.stanford.edu/analys_track/updStatus'
  38
  39   if len(updMsg) > 0:
  40     params = {'taskid':taskid,'msg':updMsg}
  41     # print "Msg: "+updMsg
  42   else:
  43     params = {'taskid':taskid}
  44
  45   readw = getWebPage(url,params)
  46   return readw